View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4483_high_1 (Length: 520)
Name: NF4483_high_1
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4483_high_1 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 3536976 - 3536475
Alignment:
| Q |
19 |
cggaccaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgctaactca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3536976 |
cggaccaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgctaactca |
3536877 |
T |
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| Q |
119 |
ataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaactgctg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3536876 |
ataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaactgctg |
3536777 |
T |
|
| Q |
219 |
tgccaatccttcccattccaataatgccaatggttttcccagagaactgcaacgaaaataccaaatgaaaaaacaaataattttcaggttggaaaatgaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3536776 |
tgccaatccttcccattccaataatgccaatggttttcccagagaactgcaacgaaaataccaaatgaaaaaacaaataattttcaggttggaaaatgaa |
3536677 |
T |
|
| Q |
319 |
agggggagggtccgacatgagaatccacataaccgattttaatgaacagtgtgacacgattatatgattgaagctctgcaacccttgcaacatgatgata |
418 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3536676 |
agggggagggtccgacatgagaatccacataaccaattttaatgaacagtgtgacacgattatatgattgaagctttgcaacccttgcaacatgatgata |
3536577 |
T |
|
| Q |
419 |
gatcactgagtacaatttttaaatgtatttcactgttttataaaagattaaaaatttgtaagtattgaaatatctgtaacttgtcaaattcgagagtctg |
518 |
Q |
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|||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
3536576 |
gatcactgcgtccaatttttaaatgtttttcactgttttataaaagattacaaatttgtaagtattgaaatatctgtagcttgtcaaactcgagagtctg |
3536477 |
T |
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| Q |
519 |
cg |
520 |
Q |
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|| |
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| T |
3536476 |
cg |
3536475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 3479826 - 3480098
Alignment:
| Q |
19 |
cggaccaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgctaactca |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |
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| T |
3479826 |
cggaccaagtgcattgatgacctcccggttgatgatgtgatgggtttcctctgtaagtgagcaggcaacaactagtatgtcgcagttggatgctaactca |
3479925 |
T |
|
| Q |
119 |
ataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaactgctg |
218 |
Q |
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| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3479926 |
acaacatttggatagtacttgtattttgactcctgcttttgagttctagaatagtagcatattgaacaattaaaaccttcagctctcttggcaattgctg |
3480025 |
T |
|
| Q |
219 |
tgccaatccttcccattccaataatgccaatggttttcccagagaactgcaacgaaaataccaaatgaaaaaa |
291 |
Q |
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|||||||||| |||| |||| |||||||| ||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
3480026 |
tgccaatcctgcccagcccaacaatgccaacggttttcccagagaactgcaaggaaaataccagatgaaaaaa |
3480098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 3519434 - 3519685
Alignment:
| Q |
19 |
cggaccaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgctaactca |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||| || ||||||||||||||||||||||||||| |
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| T |
3519434 |
cggaccaagtgcattgatgacctcccggttgatgatgtgatgggtttcatctgtaagagagcaggcaacgactagtatgtcgcagttggatgctaactca |
3519533 |
T |
|
| Q |
119 |
ataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaactgctg |
218 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
3519534 |
acaacatttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttcgcaattgctg |
3519633 |
T |
|
| Q |
219 |
tgccaatccttcccattccaataatgccaatggttttcccagagaactgcaa |
270 |
Q |
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||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
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| T |
3519634 |
tgccaatccttcccagcccaataatgccaaccgttttaccagagaactgcaa |
3519685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 3522983 - 3523244
Alignment:
| Q |
20 |
ggaccaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgctaactcaa |
119 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||||| | ||||| |
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| T |
3522983 |
ggaccgagtgcgttaatgacctcccggttgatgatgtgatgggtttcctctgtaagggggcaggcaacaactagtatatcacagttggatgcaagctcaa |
3523082 |
T |
|
| Q |
120 |
taaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaactgctgt |
219 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||||||| |||| |
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| T |
3523083 |
caacacttggatagtacttgtattttgactcctgcttttgagttctcgaatagtaggatattggacagttaaagccttcagctctcttggcaatggctgc |
3523182 |
T |
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| Q |
220 |
gccaatccttcccattccaataatgccaatggttttcccagagaactgcaacgaaaatacca |
281 |
Q |
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|||||||||||||| ||||||||||| | ||||||||||||||||||| |||||||||| |
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| T |
3523183 |
gccaatccttcccagcccaataatgccgacagttttcccagagaactgcagggaaaatacca |
3523244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 474
Target Start/End: Original strand, 3523361 - 3523457
Alignment:
| Q |
377 |
attatatgattgaagctctgcaacccttgcaacatgatgatagatcactgagtacaatttttaaatgtatttcactgttttataaaagattaaaaatt |
474 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||| ||||| | || ||| |||||||||| |||||||||||| | |||| ||| ||||| |
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| T |
3523361 |
attatatgattgaagttctacaacccttaaaacatgatgatggatcatcgtgtccaa-ttttaaatgtttttcactgttttctgaaagcttacaaatt |
3523457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 414
Target Start/End: Original strand, 3519730 - 3519811
Alignment:
| Q |
333 |
acatgagaatccacataaccgattttaatgaacagtgtgacacgattatatgattgaagctctgcaacccttgcaacatgat |
414 |
Q |
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|||||||||| || |||||||||||||||| ||| || ||| ||||||||||||||| | ||||| |||| || |||||| |
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| T |
3519730 |
acatgagaatacatgtaaccgattttaatgagaagtatggcacaattatatgattgaagttttgcaaaccttacagcatgat |
3519811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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