View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4483_high_10 (Length: 290)
Name: NF4483_high_10
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4483_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 72 - 252
Target Start/End: Original strand, 49374420 - 49374600
Alignment:
| Q |
72 |
ctcgttctagaaatggaacttggatctgaattctgatttctgaaagacgttaatattgtttgtttcgtagacgttgatgacggttacgcgaacgtctcta |
171 |
Q |
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| T |
49374420 |
ctcgttctagaaatggaacttggatctgaattctgatttctgaaagacgttaatattgtttgtttcgtagacgttgatgacggttacgcgaacgtctcta |
49374519 |
T |
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| Q |
172 |
atctttataacggttttcttttcacccgcctttcactttcccttccctccgtttttcctatttggattggatataattata |
252 |
Q |
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| T |
49374520 |
atctttataacggttttcttttcacccgcctttcactttcccttccctccgtttttcctatttggattggatataattata |
49374600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 22274502 - 22274466
Alignment:
| Q |
243 |
tataattataagggttaaatatgttcttggtccctat |
279 |
Q |
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| T |
22274502 |
tataattataagggttaaatatgtttttggtccctat |
22274466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 34448672 - 34448709
Alignment:
| Q |
242 |
atataattataagggttaaatatgttcttggtccctat |
279 |
Q |
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|||| ||||||||||||||||||||| ||||||||||| |
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| T |
34448672 |
atatcattataagggttaaatatgtttttggtccctat |
34448709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 27727089 - 27727125
Alignment:
| Q |
243 |
tataattataagggttaaatatgttcttggtccctat |
279 |
Q |
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|||||| |||||||||||||||||| ||||||||||| |
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| T |
27727089 |
tataataataagggttaaatatgtttttggtccctat |
27727125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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