View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4483_high_12 (Length: 238)
Name: NF4483_high_12
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4483_high_12 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2824 - 2601
Alignment:
| Q |
1 |
tttcttattttcgggtctgtggtcaaaacatgaacgtcacattggagtatgttttctttttcacccatttgcctattataggccgatcaattgtcacaat |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||| || |||| |||||||| |||| |
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| T |
2824 |
tttcttattttcgggtctgtagtcaaaacatgaacgtcacattggaagacgttttgtttttgacccatttgcctattacagaccgaccaattgtcccaat |
2725 |
T |
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| Q |
101 |
taacagtaaagacttacaagttttcgatcgaattttttcaatnnnnnnnnnncttagcctactcgagttgagaggtatttattgtgatagtgatagaaat |
200 |
Q |
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||| |||||||||||||| | |||||||| |||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||| |
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| T |
2724 |
taatagtaaagacttacaggctttcgatcaaattttttcaataaaaaaaaaacttagcttattcgagttgagaggtatttgttgtgatagtgatagaaat |
2625 |
T |
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| Q |
201 |
gtagatgtgaggatcaagtccatc |
224 |
Q |
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|||||||||||||||||| ||||| |
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| T |
2624 |
gtagatgtgaggatcaaggccatc |
2601 |
T |
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Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 24679302 - 24679501
Alignment:
| Q |
1 |
tttcttattttcgggtctgtggtcaaaacatgaacgtcacattggagtatgttttctttttcacccatttgcctattataggccgatcaattgtcacaat |
100 |
Q |
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||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||| ||||| || |||||||||| || ||| ||| |||||| | |||| |
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| T |
24679302 |
tttcttattttcgagtcagtggtcaaaacatgaacgtcgcattggaggatgttttgtttttgacacatttgcctactacaggtcgaccaattgcctcaat |
24679401 |
T |
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| Q |
101 |
taacagtaaagacttacaagttttcgatcgaattttttcaatnnnnnnnnnncttagcctactcgagttgagaggtatttattgtgatagtgatagaaat |
200 |
Q |
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|||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
24679402 |
taacagtaaagacttacaagcttttgattgaattttttcaat--aaaaaaaacttagcctactcgagttgaaaggtatttgttgtgatagtgatagaaat |
24679499 |
T |
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