View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4483_high_5 (Length: 350)
Name: NF4483_high_5
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4483_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 25933413 - 25933554
Alignment:
| Q |
195 |
caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
294 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933413 |
caagcaggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
25933512 |
T |
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| Q |
295 |
ttgactctgttgttgagggttgtgatggtgtctttcatactg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933513 |
ttgactctgttgttgagggttgtgatggtgtctttcatactg |
25933554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 26100932 - 26101073
Alignment:
| Q |
195 |
caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
294 |
Q |
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||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26100932 |
caagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcct |
26101031 |
T |
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| Q |
295 |
ttgactctgttgttgagggttgtgatggtgtctttcatactg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26101032 |
ttgactctgttgttgagggttgtgatggtgtctttcatactg |
26101073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 25933201 - 25933329
Alignment:
| Q |
7 |
gaagcaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttc |
106 |
Q |
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| T |
25933201 |
gaaggaaaagtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctccttcaatgtggttacactgtcagagcaactgttc |
25933300 |
T |
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| Q |
107 |
gtcatccaagtcagtacttctttttcctt |
135 |
Q |
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|||| |||||||||| ||||||| ||||| |
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| T |
25933301 |
gtcacccaagtcagtgcttctttctcctt |
25933329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 26100708 - 26100849
Alignment:
| Q |
7 |
gaagcaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttc |
106 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||| | |
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| T |
26100708 |
gaaggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaagttcctactccaacgtggttacactgtccgagccactgtcc |
26100807 |
T |
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| Q |
107 |
gtcatccaagtcagtacttctttttccttcaaattctttctc |
148 |
Q |
| |
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|| | |||||| || | | |||||||||||| ||||||||| |
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| T |
26100808 |
gtgacccaagtatgtgcatgtttttccttcaacttctttctc |
26100849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 213 - 336
Target Start/End: Original strand, 29548958 - 29549081
Alignment:
| Q |
213 |
aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgttgagg |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||| ||||| |||||| || | | |
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| T |
29548958 |
aaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgttattcaag |
29549057 |
T |
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| Q |
313 |
gttgtgatggtgtctttcatactg |
336 |
Q |
| |
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| || |||||||||||||||||| |
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| T |
29549058 |
gatgccatggtgtctttcatactg |
29549081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 29554904 - 29555019
Alignment:
| Q |
7 |
gaagcaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttc |
106 |
Q |
| |
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|||| ||||||||| ||||| || |||||| |||| ||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
29554904 |
gaaggaaaggtggtttgtgtaactggtgcttcaggttatattgcttcatggcttgtcaaatttctccttcaacgtggttacactgttagagccactgttc |
29555003 |
T |
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| Q |
107 |
gtcatccaagtcagta |
122 |
Q |
| |
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|| |||||||| |||| |
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| T |
29555004 |
gtgatccaagttagta |
29555019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 29548743 - 29548865
Alignment:
| Q |
13 |
aaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttcgtcatc |
112 |
Q |
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||||| |||||||| ||||||||| ||||| |||||||||||| |||| |||||||| || ||||||||||| ||||| ||||||||||||||| | | |
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| T |
29548743 |
aaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtggttatactgttagagccactgttcgtgacc |
29548842 |
T |
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| Q |
113 |
caagtcagtacttctttttcctt |
135 |
Q |
| |
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| ||||||| ||||||| ||||| |
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| T |
29548843 |
ctagtcagtgcttctttctcctt |
29548865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 334
Target Start/End: Original strand, 29555154 - 29555288
Alignment:
| Q |
200 |
aggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgac |
299 |
Q |
| |
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|||||||||| | |||||||| || || |||||||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| |||||| |
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| T |
29555154 |
aggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggttcatttgac |
29555253 |
T |
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| Q |
300 |
tctgttgttgagggttgtgatggtgtctttcatac |
334 |
Q |
| |
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|||| || | |||||| ||||||| |||||||| |
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| T |
29555254 |
catgttattcaaggttgtcatggtgtttttcatac |
29555288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 29559120 - 29559194
Alignment:
| Q |
7 |
gaagcaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgt |
81 |
Q |
| |
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|||| |||||| |||||||| ||||||| | |||| ||||||||||||| ||||||||||||| || |||||| |
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| T |
29559120 |
gaaggaaaggttgtgtgtgtaacaggtggttcaggttatattgcttcatggcttgttaagtttcttctccaacgt |
29559194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 336
Target Start/End: Original strand, 87805 - 87928
Alignment:
| Q |
213 |
aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgttgagg |
312 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| |||||||| |||||||| || |||||| |||| | ||||||||| | ||||| ||||||||| | | |
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| T |
87805 |
aaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctttgattctgttgttcaag |
87904 |
T |
|
| Q |
313 |
gttgtgatggtgtctttcatactg |
336 |
Q |
| |
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| ||| ||||||||||||| |||| |
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| T |
87905 |
gctgtcatggtgtctttcacactg |
87928 |
T |
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