View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4483_low_12 (Length: 253)

Name: NF4483_low_12
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4483_low_12
NF4483_low_12
[»] chr6 (7 HSPs)
chr6 (126-253)||(22427058-22427185)
chr6 (127-229)||(31986529-31986631)
chr6 (134-251)||(22470747-22470866)
chr6 (16-48)||(22427262-22427294)
chr6 (127-222)||(31983895-31983989)
chr6 (158-207)||(18736672-18736721)
chr6 (142-234)||(24002375-24002467)
[»] chr1 (2 HSPs)
chr1 (142-226)||(31917009-31917093)
chr1 (151-211)||(9851180-9851240)
[»] chr4 (2 HSPs)
chr4 (170-227)||(12573018-12573075)
chr4 (158-227)||(22049987-22050057)
[»] chr2 (1 HSPs)
chr2 (142-227)||(33851530-33851615)
[»] chr8 (1 HSPs)
chr8 (158-227)||(26857507-26857576)
[»] chr7 (1 HSPs)
chr7 (145-206)||(23388843-23388904)
[»] chr5 (1 HSPs)
chr5 (142-210)||(26332585-26332653)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 22427185 - 22427058
Alignment:
Q  126 atatttgcgccttttgaacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaata 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22427185 atatttgcgccttttgaacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaata 22427086  T
Q  226 aagaatatttatcattttataagtaaaa 253  Q
    |||||||||||||||||||  |||||||    
T  22427085 aagaatatttatcattttagtagtaaaa 22427058  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 31986529 - 31986631
Alignment:
Q  127 tatttgcgccttttgaacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataa 226  Q
    ||||| |||||||| ||||| ||||| ||| |||| |||||| ||| |||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  31986529 tatttccgccttttcaacaagaaatatagaaagaaggatgatcaaaacataaacaaacatgagatattgaaccatatttttcctcctttgcatgtaataa 31986628  T
Q  227 aga 229  Q
    |||    
T  31986629 aga 31986631  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 22470866 - 22470747
Alignment:
Q  134 gccttttgaacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataaaga--at 231  Q
    ||||||| ||||| |||| |||| |||| |||||| |||||||||||||||| ||| |||||| |||||||||||||  |||||||||||||||||   |    
T  22470866 gccttttcaacaataaattgagagagaaggatgatcaaagcataaagaaacacgaggtattgagccatatttttcctacattgcatgtaataaagatttt 22470767  T
Q  232 atttatcattttataagtaa 251  Q
     |||||||||||||||||||    
T  22470766 ttttatcattttataagtaa 22470747  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 22427294 - 22427262
Alignment:
Q  16 gaacaaggaaggtaacctgcgttgtgaaatgag 48  Q
    |||||||||||||||||||||||||||||||||    
T  22427294 gaacaaggaaggtaacctgcgttgtgaaatgag 22427262  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 31983895 - 31983989
Alignment:
Q  127 tatttgcgccttttgaacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgta 222  Q
    ||||| |||||||| ||||| |||  |||| |||| |||||| ||| || ||| |||||||||||||||| |||| |||||||||  |||||||||    
T  31983895 tatttccgcctttttaacaagaaactgagaaagaaggatgatcaaaacaaaaacaaacatgagatattgagccat-tttttcctcctttgcatgta 31983989  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 18736721 - 18736672
Alignment:
Q  158 agaaagatgatgaaagcataaagaaacatgagatattgaaccatattttt 207  Q
    ||||||||||| |||||||||| ||| |||||| ||||| ||||||||||    
T  18736721 agaaagatgatcaaagcataaacaaatatgagaaattgagccatattttt 18736672  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 24002467 - 24002375
Alignment:
Q  142 aacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataaagaatatt 234  Q
    ||||| ||||||||| |||||||| || ||| |||||| ||| | || | |||||  ||||||| || ||  |||||||||||||||||||||    
T  24002467 aacaagaaatagagaaagaaagatcattaaaacataaataaagaagataaattgagtcatatttgtcttcctttgcatgtaataaagaatatt 24002375  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 31917093 - 31917009
Alignment:
Q  142 aacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataa 226  Q
    ||||| ||||||||| | ||||||||| |||||||||| ||| ||||||  ||||| |||||||||||||  || ||||||||||    
T  31917093 aacaagaaatagagaaataaagatgatcaaagcataaacaaatatgagaatttgaatcatatttttcctcctttccatgtaataa 31917009  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 9851240 - 9851180
Alignment:
Q  151 tagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctc 211  Q
    ||||||||||| |||||| |||||||||| ||| |||||   |||| ||||||||||||||    
T  9851240 tagagatagaacgatgatcaaagcataaataaatatgagtatttgagccatatttttcctc 9851180  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 12573075 - 12573018
Alignment:
Q  170 aaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataaa 227  Q
    |||||||||| ||||||||||   ||||||||||||||| ||||||| ||||||||||    
T  12573075 aaagcataaacaaacatgagaatgtgaaccatatttttcttcaattgtatgtaataaa 12573018  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 22049987 - 22050057
Alignment:
Q  158 agaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttc-ctcaattgcatgtaataaa 227  Q
    ||||||||||| ||| |||||| ||||||||||  |||| ||||||||||| |||| || |||||||||||    
T  22049987 agaaagatgatcaaatcataaataaacatgagaatttgagccatatttttctctcatttacatgtaataaa 22050057  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 33851615 - 33851530
Alignment:
Q  142 aacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataaa 227  Q
    ||||| ||||||||| ||||||||||| ||| ||||||  |||||||||  |||| |||||||||| | || ||||||| ||||||    
T  33851615 aacaagaaatagagaaagaaagatgatcaaaacataaatgaacatgagaatttgagccatattttttcacatttgcatggaataaa 33851530  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 26857576 - 26857507
Alignment:
Q  158 agaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctcaattgcatgtaataaa 227  Q
    ||||||||||||||| |||||| |||| | ||| ||  | ||||||||||||||  ||||||||||||||    
T  26857576 agaaagatgatgaaaacataaacaaacttaagaaatgaatccatatttttcctcgtttgcatgtaataaa 26857507  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 23388904 - 23388843
Alignment:
Q  145 aacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttt 206  Q
    |||||||||||| | || ||||||||||||||||| ||| ||||||  |||| |||||||||    
T  23388904 aacaaatagagaaaaaaggatgatgaaagcataaacaaaaatgagaatttgagccatatttt 23388843  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 26332653 - 26332585
Alignment:
Q  142 aacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcct 210  Q
    ||||| ||||||||| |||||| |||| |||||||||| |||||||  | ||| | |||||||||||||    
T  26332653 aacaagaaatagagaaagaaagttgatcaaagcataaacaaacatggaaaatttagccatatttttcct 26332585  T

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