View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4483_low_13 (Length: 248)

Name: NF4483_low_13
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4483_low_13
NF4483_low_13
[»] chr3 (7 HSPs)
chr3 (3-138)||(26661869-26662004)
chr3 (46-139)||(55216627-55216720)
chr3 (1-85)||(55216661-55216745)
chr3 (71-138)||(40654257-40654324)
chr3 (58-132)||(41264972-41265046)
chr3 (91-138)||(8473122-8473169)
chr3 (203-231)||(26661777-26661805)
[»] chr7 (5 HSPs)
chr7 (17-138)||(23777221-23777342)
chr7 (45-137)||(10596223-10596315)
chr7 (71-138)||(19367294-19367361)
chr7 (41-99)||(23803154-23803212)
chr7 (5-69)||(10596203-10596267)
[»] chr4 (8 HSPs)
chr4 (1-132)||(19677763-19677894)
chr4 (1-139)||(7672694-7672825)
chr4 (46-138)||(3257600-3257692)
chr4 (45-138)||(10395256-10395344)
chr4 (58-138)||(19747366-19747445)
chr4 (58-138)||(19792361-19792440)
chr4 (56-138)||(42540346-42540428)
chr4 (45-97)||(23689228-23689279)
[»] chr6 (5 HSPs)
chr6 (1-136)||(18271853-18271983)
chr6 (1-69)||(20836793-20836861)
chr6 (57-138)||(20116231-20116312)
chr6 (92-137)||(31350951-31350996)
chr6 (17-86)||(33427838-33427907)
[»] chr1 (6 HSPs)
chr1 (41-132)||(45376599-45376690)
chr1 (1-130)||(5993731-5993860)
chr1 (1-49)||(47930894-47930942)
chr1 (91-138)||(29321425-29321472)
chr1 (1-82)||(8812527-8812603)
chr1 (62-138)||(11619226-11619302)
[»] chr2 (6 HSPs)
chr2 (48-138)||(27080872-27080957)
chr2 (66-133)||(36330308-36330375)
chr2 (1-54)||(5722932-5722985)
chr2 (1-69)||(27080916-27080984)
chr2 (58-139)||(32971140-32971221)
chr2 (1-86)||(33381873-33381948)
[»] chr5 (7 HSPs)
chr5 (8-138)||(29445253-29445382)
chr5 (92-138)||(19914530-19914576)
chr5 (56-138)||(35996033-35996115)
chr5 (56-138)||(43259698-43259780)
chr5 (90-138)||(27514340-27514388)
chr5 (57-132)||(5791986-5792060)
chr5 (47-101)||(10476388-10476442)
[»] chr8 (2 HSPs)
chr8 (1-85)||(18605351-18605435)
chr8 (51-104)||(26099339-26099392)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-79)||(60181-60254)
[»] scaffold0086 (1 HSPs)
scaffold0086 (42-138)||(20540-20636)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 26662004 - 26661869
Alignment:
Q  3 aaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactg 102  Q
    |||| ||||||||||||| ||||||||||||||| ||||||| ||||||| | ||||||||||| ||||||||| || | |||| | |||||||||| ||    
T  26662004 aaataaaattgaagtttaattatcgaactgaactggactgttgcgaactggactgaactgttttaaatcgaactaaactattttgaactgaactgaattg 26661905  T
Q  103 tttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26661904 tttctgttcagtttccaaactgttaataatggttca 26661869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 55216720 - 55216627
Alignment:
Q  46 cgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttcaa 139  Q
    ||||||||| || ||||||| ||||||||||||| | |||| | ||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  55216720 cgaactgaactggactgtttcgaatcgaactgaactattttgaactgaactgaactgtttcagttcagtttcagaactgttagtaatggttcaa 55216627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 55216745 - 55216661
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttt 85  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||  ||| |||||| |||||||  |||||||| |||||    
T  55216745 acaaatgaaattgaattttagttatcgaactgaactggactgtttcgaatcgaactgaactattttgaactgaactgaactgttt 55216661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 40654257 - 40654324
Alignment:
Q  71 cgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    |||||||||||||||| | ||||||| ||||||||| |||||||||| |||||||||||||| |||||    
T  40654257 cgaactgaattgttttgaactgaactaaactgtttcagttcagtttcaaaactgttagtaatagttca 40654324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 41264972 - 41265046
Alignment:
Q  58 aactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaat 132  Q
    |||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |||| ||| ||| ||||||    
T  41264972 aactgttttgaatcgagctgaactgttttaaactgaattgaactgtttcagttcaatttcaaaattgtcagtaat 41265046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 8473169 - 8473122
Alignment:
Q  91 tgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||||||    
T  8473169 tgaattgaactgtttcagttcagtttcagaactgttagtaatggttca 8473122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 26661805 - 26661777
Alignment:
Q  203 catataaatacaccttagtatgtaaggat 231  Q
    |||||||||||||||||||||||||||||    
T  26661805 catataaatacaccttagtatgtaaggat 26661777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 23777221 - 23777342
Alignment:
Q  17 tttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagttt 116  Q
    ||||||||| ||||||||||  |||||| |||||||||||||||||||| ||||||||||||| |||||| |   ||||||||||||||| |||||||||    
T  23777221 tttagttattgaactgaactgaactgtttcgaactgaattgaactgtttcgaatcgaactgaactgttttgaaaagaactgaactgtttcagttcagttt 23777320  T
Q  117 ccaaactgttagtaatggttca 138  Q
    |  |||||||||||||| ||||    
T  23777321 cagaactgttagtaatgattca 23777342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 10596223 - 10596315
Alignment:
Q  45 ccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttc 137  Q
    |||||||||| ||||||||||||||||||| |||| |||||| | || |||||||||||||| ||| ||||||  ||||||||||||||||||    
T  10596223 ccgaactgaactgaactgttttgaatcgaattgaactgttttgaactaaactgaactgtttcagttaagtttcagaactgttagtaatggttc 10596315  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 19367294 - 19367361
Alignment:
Q  71 cgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||||| |||||| | ||||||||||||||||  ||||||||||  ||||||| |||||||||||    
T  19367294 cgaactgaactgttttcaactgaactgaactgtttaagttcagtttcagaactgttggtaatggttca 19367361  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 23803154 - 23803212
Alignment:
Q  41 tgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaa 99  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||| | | ||||||||    
T  23803154 tgttccgaactgaatcgaactgtttataatcgaactgaattgttttgaaccgaactgaa 23803212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 10596203 - 10596267
Alignment:
Q  5 atgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaa 69  Q
    ||||||||||| |||||||| |||||||||||  ||||||  |||  ||||||||||||||||||    
T  10596203 atgaaattgaattttagttaccgaactgaactgaactgttttgaatcgaattgaactgttttgaa 10596267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 19677894 - 19677763
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaac 100  Q
    ||||| ||||| ||| |||||||| |||| ||||||  ||||||||||||| ||  |||||||||||||||||||| || |||||| | | ||| |||||    
T  19677894 acaaaagaaatcgaattttagttaccgaattgaactgaactgttccgaacttaaccgaactgttttgaatcgaactaaactgttttgaaccgaattgaac 19677795  T
Q  101 tgtttctgttcagtttccaaactgttagtaat 132  Q
    | |||| |||||||||| ||||||||||||||    
T  19677794 tatttcagttcagtttcaaaactgttagtaat 19677763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 7672694 - 7672825
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaac 100  Q
    ||||||||||||||| |||||||| | |||||||||     ||| ||||||||| ||||||||||   ||||||||||| | |||| |  |||||||||     
T  7672694 acaaatgaaattgaattttagttaccaaactgaact-----gtttcgaactgaactgaactgtttc--atcgaactgaactattttgaattgaactgaat 7672786  T
Q  101 tgtttctgttcagtttccaaactgttagtaatggttcaa 139  Q
    |||||| ||||||||||  ||||||||||||||||||||    
T  7672787 tgtttcagttcagtttcacaactgttagtaatggttcaa 7672825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 3257692 - 3257600
Alignment:
Q  46 cgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||||| | ||| ||||| |||||||||||| |||||| |  ||||| |||||||||| |||||||||| ||||||||| ||||| ||||    
T  3257692 cgaactgaactaaacggttttaaatcgaactgaactgttttgaaatgaaccgaactgtttcagttcagtttcaaaactgttaataatgattca 3257600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 10395344 - 10395256
Alignment:
Q  45 ccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    |||||||||| ||||| ||||  |||||||||||| |||||      | ||||||||||||| |||||||||  ||||||||||||||||||||    
T  10395344 ccgaactgaactgaacagtttcaaatcgaactgaactgttta-----ggactgaactgtttcagttcagtttgaaaactgttagtaatggttca 10395256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 19747445 - 19747366
Alignment:
Q  58 aactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    |||| |||||||| |||||||| |||||  | | ||||||||||||| | ||||||||||  |||||||||||||||||||    
T  19747445 aactattttgaatagaactgaactgtttcgaacagaactgaactgtt-cagttcagtttcagaactgttagtaatggttca 19747366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 19792361 - 19792440
Alignment:
Q  58 aactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    |||| |||||||| |||||||| |||||  | | ||||||||||||| | ||||||||||  |||||||||||||||||||    
T  19792361 aactattttgaatagaactgaactgtttcgaacagaactgaactgtt-cagttcagtttcagaactgttagtaatggttca 19792440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 42540346 - 42540428
Alignment:
Q  56 tgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||||||  | |||||||||| |||||| |  ||||||||| || ||| || |||||||  |||||||||||||||||||    
T  42540346 tgaactgtttcaagtcgaactgaactgttttgaattgaactgaattgcttcagtccagtttcagaactgttagtaatggttca 42540428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 23689279 - 23689228
Alignment:
Q  45 ccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactg 97  Q
    ||||||||||||||||||||| |||| |||||||| |||||| | ||||||||    
T  23689279 ccgaactgaattgaactgtttcgaatggaactgaa-tgttttgaactgaactg 23689228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 18271853 - 18271983
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaac 100  Q
    ||||||||||||||| ||||||||  ||||||||||     ||||||||||| | |||||||||| ||||||||||||| | |||| | ||||| |||||    
T  18271853 acaaatgaaattgaattttagttactgaactgaact-----gttccgaactgcactgaactgtttcgaatcgaactgaactattttgaactgaattgaac 18271947  T
Q  101 tgtttctgttcagtttccaaactgttagtaatggtt 136  Q
    || ||| |||||| |||  |||||||||||||||||    
T  18271948 tgcttcagttcagattcagaactgttagtaatggtt 18271983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20836793 - 20836861
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaa 69  Q
    ||||||||||||||| |||||||| |||||||||||  |||||| ||||  ||||||||||||||||||    
T  20836793 acaaatgaaattgaattttagttaccgaactgaactgaactgtttcgaatcgaattgaactgttttgaa 20836861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 20116312 - 20116231
Alignment:
Q  57 gaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||||| |||| |||||||| | ||||||   ||||||||||||||  ||||| |||| |||||||||||||| |||||    
T  20116312 gaactgtttcgaatggaactgaacttttttaaaacgaactgaactgttttagttcaatttcaaaactgttagtaatagttca 20116231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 31350996 - 31350951
Alignment:
Q  92 gaactgaactgtttctgttcagtttccaaactgttagtaatggttc 137  Q
    |||| |||||||||| ||||||||||  ||||||||||||||||||    
T  31350996 gaaccgaactgtttccgttcagtttcagaactgttagtaatggttc 31350951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 33427838 - 33427907
Alignment:
Q  17 tttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgtttt 86  Q
    |||||||| |||||||||||  | ||||| ||||||||  ||||| ||| ||||| ||||||||||||||    
T  33427838 tttagttaccgaactgaactgaaatgttctgaactgaaccgaactatttcgaatcaaactgaattgtttt 33427907  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 45376599 - 45376690
Alignment:
Q  41 tgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaat 132  Q
    ||||||||||||||||||||| ||| ||||| ||||||| |||||| | |||||||||||||| || |||||||||| |||||||| |||||    
T  45376599 tgttccgaactgaattgaactatttcgaatcaaactgaactgttttgaactgaactgaactgtatcagttcagtttcaaaactgttggtaat 45376690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 5993731 - 5993860
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaac 100  Q
    ||||| ||||| ||| | |||||| |||||||||||  ||||||  ||||||||  ||||||||| |||||||| |||| |||||| | | |||||||||    
T  5993731 acaaacgaaatcgaattatagttaccgaactgaactgaactgttttgaactgaaccgaactgtttcgaatcgaattgaactgttttgaaccgaactgaac 5993830  T
Q  101 tgtttctgttcagtttccaaactgttagta 130  Q
    |||||| ||||||||||  || ||||||||    
T  5993831 tgtttcagttcagtttcagaattgttagta 5993860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47930894 - 47930942
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaa 49  Q
    ||||| ||||||||| |||||||| ||||||||||| ||||||||||||    
T  47930894 acaaacgaaattgaattttagttaccgaactgaactggactgttccgaa 47930942  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 29321425 - 29321472
Alignment:
Q  91 tgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| ||||||    
T  29321425 tgaaccgaactgtttctgttcagtttcaaaattgttagtaacggttca 29321472  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 8812527 - 8812603
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattg 82  Q
    ||||||||||||||| |||||||| |||||||||||     ||| | || |||| |||||||||| ||||||||||| ||||    
T  8812527 acaaatgaaattgaattttagttaccgaactgaact-----gtttcaaattgaactgaactgtttcgaatcgaactgtattg 8812603  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 11619302 - 11619226
Alignment:
Q  62 gttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    |||| ||| |||||| ||||||||||| || ||| ||||| |||| |||||||| | ||| ||||| ||||||||||    
T  11619302 gtttcgaaacgaactaaattgttttaaactaaaccgaactatttcagttcagttccaaaattgttaataatggttca 11619226  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 27080957 - 27080872
Alignment:
Q  48 aactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||| |||||||||| ||||||||||||| ||||||     ||||||||||||||| ||||||||||  |||||||||||||||||||    
T  27080957 aactgaactgaactgtttcgaatcgaactgaactgtttt-----gaactgaactgtttcagttcagtttcttaactgttagtaatggttca 27080872  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 36330375 - 36330308
Alignment:
Q  66 tgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatg 133  Q
    ||||||||||||||||||||| | | |||| |||||||||||||||||||||  || |||||||||||    
T  36330375 tgaatcgaactgaattgttttgaaccgaaccgaactgtttctgttcagtttcagaattgttagtaatg 36330308  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5722932 - 5722985
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaa 54  Q
    ||||| ||||||||| |||||||| |||||||||||  ||||||||||||||||    
T  5722932 acaaacgaaattgaattttagttaccgaactgaactgaactgttccgaactgaa 5722985  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27080984 - 27080916
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaa 69  Q
    ||||||||||||||| |||||||| | |||||||||  |||||| ||||  ||| ||||||||||||||    
T  27080984 acaaatgaaattgaattttagttaccaaactgaactgaactgtttcgaatcgaactgaactgttttgaa 27080916  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 32971221 - 32971140
Alignment:
Q  58 aactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttcaa 139  Q
    |||||||| | ||||||  ||||| |||||| |||||| |||||||| | ||||||||||  |||| ||| |||||||||||    
T  32971221 aactgtttcgtatcgaatcgaattattttaaactgaaccgaactgttacggttcagtttcagaactattaataatggttcaa 32971140  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 33381948 - 33381873
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgtttt 86  Q
    ||||||||||||||| |||||||| |||||||||||     |||||||||     |||||||||| |||| |||||||||||||||    
T  33381948 acaaatgaaattgaattttagttaccgaactgaact-----gttccgaac-----tgaactgtttcgaattgaactgaattgtttt 33381873  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 29445253 - 29445382
Alignment:
Q  8 aaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttct 107  Q
    |||||||| ||||||||  ||||||| |   ||||||||||||||||| ||||||||  ||||||||||||| |||||| | ||||||  |||||||||     
T  29445253 aaattgaattttagttactgaactgagccgaactgttccgaactgaatggaactgttc-gaatcgaactgaactgttttgaactgaacctaactgtttca 29445351  T
Q  108 gttcagtttccaaactgttagtaatggttca 138  Q
    ||||||||||  || ||| |||||| |||||    
T  29445352 gttcagtttcagaattgtaagtaatagttca 29445382  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 19914530 - 19914576
Alignment:
Q  92 gaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||    
T  19914530 gaactgaactgtttcagttcagtttcagaactgttagtaatggttca 19914576  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 35996033 - 35996115
Alignment:
Q  56 tgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    |||||||||| |||||||||  || |||||| | ||||||  ||||||||| ||||||||||  || ||||||||||||||||    
T  35996033 tgaactgtttcgaatcgaaccaaactgttttgaactgaacaaaactgtttcagttcagtttcagaattgttagtaatggttca 35996115  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 43259780 - 43259698
Alignment:
Q  56 tgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    |||||||||| |||||||||| || |||||  | |||||||||| |||||| ||||| ||||  ||||||||||||| |||||    
T  43259780 tgaactgtttcgaatcgaactaaactgtttcgaactgaactgaattgtttcagttcaatttcagaactgttagtaattgttca 43259698  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 27514388 - 27514340
Alignment:
Q  90 ctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||| ||||||||| ||||||||||  |||||||||||||||||||    
T  27514388 ctgaacttaactgtttcagttcagtttcagaactgttagtaatggttca 27514340  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 5791986 - 5792060
Alignment:
Q  57 gaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaat 132  Q
    ||||||||| ||||||||||||| |||||| | | |||||||||||||||  |||||||||  |||||||| ||||    
T  5791986 gaactgtttcgaatcgaactgaactgttttgaaccgaactgaactgtttc-attcagtttcagaactgttaataat 5792060  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 10476442 - 10476388
Alignment:
Q  47 gaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaact 101  Q
    ||||||||| ||||||||| ||||||||||||| |||||| | | ||||||||||    
T  10476442 gaactgaatcgaactgtttcgaatcgaactgaactgttttgaaccgaactgaact 10476388  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 18605351 - 18605435
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaattgttt 85  Q
    ||||| ||||| ||| |||||||| | |||||||||  ||||||||||||| ||   |||||||||||| |||||||||||||||    
T  18605351 acaaacgaaatagaattttagttaccaaactgaactgaactgttccgaacttaaccaaactgttttgaaccgaactgaattgttt 18605435  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 26099339 - 26099392
Alignment:
Q  51 tgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtt 104  Q
    |||||||||||||||  |||||||||||| ||||  || |||||||||||||||    
T  26099339 tgaattgaactgtttcaaatcgaactgaactgttacaaactgaactgaactgtt 26099392  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 60181 - 60254
Alignment:
Q  1 acaaatgaaattgaagtttagttatcgaactgaactagactgttccgaactgaattgaactgttttgaatcgaactgaa 79  Q
    |||||| |||||||| ||||||||  ||||||||||     ||||||||||||| |||||||||| |||||||||||||    
T  60181 acaaattaaattgaattttagttacagaactgaact-----gttccgaactgaactgaactgtttcgaatcgaactgaa 60254  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 20636 - 20540
Alignment:
Q  42 gttccgaactgaattgaactgttttgaatcgaactgaattgttttaagctgaactgaactgtttctgttcagtttccaaactgttagtaatggttca 138  Q
    ||||||||| ||| | |||| ||| |||| |||||||| |||||| | ||||||  |||| ||| ||||||||||| ||| |||| ||||| |||||    
T  20636 gttccgaacggaactaaactatttcgaattgaactgaactgttttgaactgaaccaaactatttttgttcagtttcaaaattgttggtaatagttca 20540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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