View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4483_low_18 (Length: 225)
Name: NF4483_low_18
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4483_low_18 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8864264 - 8864488
Alignment:
| Q |
1 |
tccagaacacagtctcccttcctctctaaagttactgagcatttctgaatgccctgttttagaagaaaggtatgaaagtgagggaggcaggaattggtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8864264 |
tccagaacacagtctcccttcctctctaaagttactgagaatttatagatgccctattttagaagaaaggtatgaaagtgagggaggcaggaattggtct |
8864363 |
T |
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| Q |
101 |
gaaatttcttatatccctgtgatagaaataaatggcaaagtgacaatatgaataatgggaatggaaggaggcgtgccatcttgtttcaggtatgaatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8864364 |
gaaatttcttatatccctgtgatagaaataaatggcaaaatgacaatatgaataatgggaatggaaggaggtgtgccatcttgtttcaggtatgaatttc |
8864463 |
T |
|
| Q |
201 |
ttttacgttactagtcaagaataat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
8864464 |
ttttacgttactagtcaagaataat |
8864488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10892284 - 10892508
Alignment:
| Q |
1 |
tccagaacacagtctcccttcctctctaaagttactgagcatttctgaatgccctgttttagaagaaaggtatgaaagtgagggaggcaggaattggtct |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10892284 |
tccagaacacagtctcccttcctctctaaagatactgagcatttctaaatgccctgttttagaagaaaggtatgaaagtgagggaggcaggaattggtcc |
10892383 |
T |
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| Q |
101 |
gaaatttcttatatccctgtgatagaaataaatggcaaagtgacaatatgaataatgggaatggaaggaggcgtgccatcttgtttcaggtatgaatttc |
200 |
Q |
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| T |
10892384 |
gaaatttctcatatccctgtgattaaaataaatgacaaagtgacaatatgaataatgggaatggaaggaggcgtgccatcttgtttcaggtatgaatttc |
10892483 |
T |
|
| Q |
201 |
ttttacgttactagtcaagaataat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
10892484 |
ttttacgttactagtcaagaataat |
10892508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11128120 - 11127896
Alignment:
| Q |
1 |
tccagaacacagtctcccttcctctctaaagttactgagcatttctgaatgccctgttttagaagaaaggtatgaaagtgagggaggcaggaattggtct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11128120 |
tccagaacacagtctcccttcctctctaaagttactgcacatttctaattgccctgttttagaagaaaggtatgaaagtgagggaggcaggaattggtct |
11128021 |
T |
|
| Q |
101 |
gaaatttcttatatccctgtgatagaaataaatggcaaagtgacaatatgaataatgggaatggaaggaggcgtgccatcttgtttcaggtatgaatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11128020 |
gaaatttcttatatccctgtgatagaaataaatggcaaagtgacaatatgaataatgggaatggatggaggcgtgccatcttgtttcaggtatgaatttc |
11127921 |
T |
|
| Q |
201 |
ttttacgttactagtcaagaataat |
225 |
Q |
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||||| | ||||||||||||||||| |
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| T |
11127920 |
ttttatgctactagtcaagaataat |
11127896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11145873 - 11145646
Alignment:
| Q |
1 |
tccagaacacagtctcccttcctctctaaagttactgagcatttctgaatgccctgttttagaagaaaggtatgaaagtgagggaggcaggaattggtct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11145873 |
tccagaacacagtctcccttcctctctaaagttactgagcatttctaaatgccctgttttagaagaaaggtatgaaagtgagggaggcaggaattggtct |
11145774 |
T |
|
| Q |
101 |
gaaatttcttatatccctgtgatagaaataaatggcaaagtgacaatatgaataatgggaatggaaggaggcgtg---ccatcttgtttcaggtatgaat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
11145773 |
gaaatttcttatatccctgtgatagaaataaatggcaaagtgataatatgaataatgggaatggaaggaggtgtgcctcctccttgtttcaggtatgaat |
11145674 |
T |
|
| Q |
198 |
ttcttttacgttactagtcaagaataat |
225 |
Q |
| |
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||||||||||||||||||| |||||||| |
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| T |
11145673 |
ttcttttacgttactagtcgagaataat |
11145646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11157111 - 11156887
Alignment:
| Q |
1 |
tccagaacacagtctcccttcctctctaaagttactgagcatttctgaatgccctgttttagaagaaaggtatgaaagtgagggaggcaggaattggtct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
11157111 |
tccagaacacagtctcccttcctctctaaagttactgagcatttctaaatgccctgttttagaagaaaggtatgaaagtgagagaggggggaattggtcc |
11157012 |
T |
|
| Q |
101 |
gaaatttcttatatccctgtgatagaaataaatggcaaagtgacaatatgaataatgggaatggaaggaggcgtgccatcttgtttcaggtatgaatttc |
200 |
Q |
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||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11157011 |
gaaatttctcatatccctgtgataaaaataaatgacaaagtgacaatatgaataatgggaatggaaggaggcgtgccaccttgtttcaggtatgaatttc |
11156912 |
T |
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| Q |
201 |
ttttacgttactagtcaagaataat |
225 |
Q |
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||||| |||||||||| |||||||| |
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| T |
11156911 |
ttttatgttactagtcgagaataat |
11156887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 11153353 - 11153254
Alignment:
| Q |
92 |
aattggtctgaaatttcttatatccctgtgatagaaataaatggcaaagtgacaatatgaataatgggaatggaaggaggcgtgccatcttgtttcaggt |
191 |
Q |
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||||||||| ||||| || |||||||||||||| |||||||| |||| |||| ||||||| | || | || |||||||||| ||||| |||||||||||| |
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| T |
11153353 |
aattggtctaaaattgctcatatccctgtgataaaaataaatcgcaacgtgataatatgagtcat-gaaacggaaggaggcttgccaccttgtttcaggt |
11153255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 11242591 - 11242535
Alignment:
| Q |
17 |
ccttcctctctaaagttactgagcatttctgaatgccctgttttagaagaaaggtat |
73 |
Q |
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||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||| |
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| T |
11242591 |
ccttcctctcttaaggtactgagcattaaggaatgccctgtgttagaagaaaggtat |
11242535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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