View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4483_low_2 (Length: 473)
Name: NF4483_low_2
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4483_low_2 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 1458683 - 1458231
Alignment:
| Q |
1 |
ttattcttagtatataaacatagattgcaattgcactagtttgaaagttatagatcaattaacacatattaactagcaatttaagattaagaactcaatc |
100 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
1458683 |
ttattcttagtatatcaacatagattgcaatttcactagtttggaatttatagatcaattaacacatattaactatcaatttcagattaagaactcaatc |
1458584 |
T |
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| Q |
101 |
gatctaaccaccggtnnnnnnncaaattatacccgtannnnnnnattgcttatagatgatgttgtagagcatccttaaatgatgttatgatattcacact |
200 |
Q |
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| T |
1458583 |
gatctaaccaccggtaaaaaaacaaattatacccgtatttttttattgcttatagatgatgttgtagagcatccttaaatgatgttatgatattcaccct |
1458484 |
T |
|
| Q |
201 |
tcaatataatatgacaaattgacagcaatatgcttatgataactttacgatagaaaaatgacaaagaaactactattttctggcatttttcacatnnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1458483 |
tcaatataatatgacaaattgacagcaatatgcttatgataactttacgatagaaaaatgccaaagaaactactattttctggcatttttcacataaaaa |
1458384 |
T |
|
| Q |
301 |
nnctatttgagcatttggaaaatgattggttagtgtgatcttagttttgctcagtttttatgatctgttattttatcttgattagggtcttatccttctg |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458383 |
aactatttgagcatttggaaaatgattggttagtgtcatcttagttttgctcagtttttatgatctgttattttatcttgattagggtcttatccttctg |
1458284 |
T |
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| Q |
401 |
ccactgcttttttgtcatgtgaatgcttttgttctgcttaagcttctatctgt |
453 |
Q |
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| T |
1458283 |
ccactgcttttttgtcatgtgaatgcttttgttctgcttaagcttctatctgt |
1458231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 252
Target Start/End: Complemental strand, 1470154 - 1469962
Alignment:
| Q |
58 |
attaacacatattaactagcaatttaagattaagaactcaatcgatctaaccaccggtnnnnnnncaaattatacccgtannnnnnnattgcttatagat |
157 |
Q |
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| T |
1470154 |
attaacacatattaactagcaatttctgattaagaactcaatccatctaaccaccggcaaaaaaccaact-atacccgtatttttt-atagcttatagat |
1470057 |
T |
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| Q |
158 |
gatgttgtagagcatccttaaatgatgttatgatattcacacttcaatataatatgacaaattgacagcaatatgcttatgataactttacgata |
252 |
Q |
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|||| |||| |||||||| |||||||||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
1470056 |
gatggagtagtgcatccttgaatgatgttatgatattcacccttcaaaatgatatgacaaattgacagcaacatgcttatgataattttacgata |
1469962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 303 - 413
Target Start/End: Complemental strand, 1469788 - 1469674
Alignment:
| Q |
303 |
ctatttgagcatttggaaaatgattggttagt---gtgatcttagttttgctcagtttttatgatctgttattttatcttgattaggg-tcttatccttc |
398 |
Q |
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||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
1469788 |
ctatttgagcattgggaaaatgaatggttagtcatgtgatcttagttttgctcagtttttatgatctgttatttgatcttgattggggttcttatccttc |
1469689 |
T |
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| Q |
399 |
tgccactgctttttt |
413 |
Q |
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| T |
1469688 |
tgccactgctttttt |
1469674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 7403116 - 7403050
Alignment:
| Q |
303 |
ctatttgagcatttggaaaatgattggttagtgtgatcttagttttgctcagtttttatgatctgtt |
369 |
Q |
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| T |
7403116 |
ctatttgagcattgtgaaaatgaatggttagtgtgatcttagtattgctcattttttatgatatgtt |
7403050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 1182 - 1248
Alignment:
| Q |
303 |
ctatttgagcatttggaaaatgattggttagtgtgatcttagttttgctcagtttttatgatctgtt |
369 |
Q |
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| T |
1182 |
ctatttgagcattgtgaaaatgaatggttagtgtgatcttagtattgctcattttttatgatatgtt |
1248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 48009884 - 48009929
Alignment:
| Q |
249 |
gatagaaaaatgacaaagaaactactattttctggcatttttcaca |
294 |
Q |
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| T |
48009884 |
gatagagaaatgctaaagaatctactattttctggcatttttcaca |
48009929 |
T |
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