View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4483_low_4 (Length: 352)

Name: NF4483_low_4
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4483_low_4
NF4483_low_4
[»] chr3 (13 HSPs)
chr3 (18-352)||(11128169-11128506)
chr3 (18-352)||(10891898-10892235)
chr3 (18-352)||(11157160-11157497)
chr3 (18-352)||(11145991-11146331)
chr3 (18-352)||(8863878-8864215)
chr3 (179-274)||(13335651-13335746)
chr3 (234-274)||(12131049-12131089)
chr3 (179-274)||(13163727-13163822)
chr3 (179-274)||(13173775-13173870)
chr3 (233-352)||(10360953-10361072)
chr3 (304-352)||(9841727-9841775)
chr3 (304-352)||(10372994-10373042)
chr3 (234-274)||(13346909-13346949)
[»] scaffold0002 (2 HSPs)
scaffold0002 (179-274)||(133118-133213)
scaffold0002 (179-274)||(143166-143261)
[»] chr6 (1 HSPs)
chr6 (240-321)||(31676982-31677063)
[»] chr1 (1 HSPs)
chr1 (234-321)||(828674-828761)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 11128506 - 11128169
Alignment:
Q  18 atatcactacctcaacggatgaacaccctcaccactcttgaaagtttgtatctccacagtcttccaaaactagagttttcactatgtgaaggagt---ct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||   ||    
T  11128506 atatcactacctcaacggatgaacaccctcaccactcttgaaattttgtatctccaccatcttccaaaactagagttgtcactatgtgaaggagttttct 11128407  T
Q  115 tacctcccaaattacaaacaatttctattacatctttgagaataacaaagatgccaccattaattgaatggggtttccaaagtcttacttctcttgcaat 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||      
T  11128406 tacctcccaaattacaaacaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttctctttcata 11128307  T
Q  215 attgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaa 314  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11128306 tttgtatattaaagagaatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaa 11128207  T
Q  315 gtgaaatgcttaggtggaaatgggcttcgacacctctc 352  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11128206 gtgaaatgcttaggtggaaatgggcttcgacacctctc 11128169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 10891898 - 10892235
Alignment:
Q  18 atatcactacctcaacggatgaacaccctcaccactcttgaaagtttgtatctcca-cagtcttccaaaactagagttttcactatgtgaaggagt---c 113  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||  |||||| ||| |||||||||||||||||| ||| ||| ||||||||   |    
T  10891898 atatcactacctcaacggatggacaccctcacctctcttgaatgtttgagtctccatcag-cttccaaaactagagtttgcaccatgcgaaggagttttc 10891996  T
Q  114 ttacctcccaaattacaaacaatttctattacatctttgagaataacaaagatgccaccattaattgaatggggtttccaaagtcttacttctcttgcaa 213  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||| |||    
T  10891997 ttacctcccaaattacaaaccatttctattaaatctgtgagaataacaaaaatgccgccattaattgaatggggtttccaaagccttacttatctttcaa 10892096  T
Q  214 tattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctga 313  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10892097 aattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctga 10892196  T
Q  314 agtgaaatgcttaggtggaaatgggcttcgacacctctc 352  Q
    | |||||||||||||||||||||||||||||||||||||    
T  10892197 aatgaaatgcttaggtggaaatgggcttcgacacctctc 10892235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 11157497 - 11157160
Alignment:
Q  18 atatcactacctcaacggatgaacaccctcaccactcttgaaagtttgtatctccacagtcttccaaaactagagttttcactatgtgaaggagt---ct 114  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||| |||||| |||||||||   ||    
T  11157497 atatcactacctcaacggatggacaccctcaccgctcttgaaagattgtatctccaccatcttccaaaactagagtttgcactatatgaaggagttttct 11157398  T
Q  115 tacctcccaaattacaaacaatttctattacatctttgagaataacaaagatgccaccattaattgaatggggtttccaaagtcttacttctcttgcaat 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||     
T  11157397 tacctcccaaattacaaacaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttatctttcaaa 11157298  T
Q  215 attgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaa 314  Q
     |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||   ||||||  ||||||||||||||||||| |||||||||    
T  11157297 tttgtatattaaagataatgatgatgttgttcacaccttgttgaaggagcaattgcttcccacttccttggtgtttctgtcaataagtaaactctctgaa 11157198  T
Q  315 gtgaaatgcttaggtggaaatgggcttcgacacctctc 352  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11157197 gtgaaatgcttaggtggaaatgggcttcgacacctctc 11157160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 11146331 - 11145991
Alignment:
Q  18 atatcactacctcaacggatgaacaccctcaccactcttgaaagtttgtatctccacagtcttccaaaactagagttttcactatgtgaaggagt---ct 114  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||||||  ||||| |  |||||||||||||||||| |||||||||||||||||   ||    
T  11146331 atatcactacctcaacgaatggacaccctcacaactcttgaaagtttgagtctccgccatcttccaaaactagagttgtcactatgtgaaggagttttct 11146232  T
Q  115 tacctcccaaattacaaacaatttctattacatctttgagaataacaaagatgccaccattaattgaatgggg---tttccaaagtcttacttctcttgc 211  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||   ||||||||| |||||||||||| |    
T  11146231 tacctcccaaattacaaacaatttctattgcatctgtgagaataacaaagatgccgccattaattgaatgggggggtttccaaagccttacttctcttac 11146132  T
Q  212 aatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctct 311  Q
    ||  ||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||||  ||||||||||||||||||||||||||    
T  11146131 aaatttgaaaattgaagataatgatgatattgttcacaccttgttgaaggagcaattgctacccatttccttggtgtttctgtcaataagtaatctctct 11146032  T
Q  312 gaagtgaaatgcttaggtggaaatgggcttcgacacctctc 352  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11146031 gaagtgaaatgcttaggtggaaatgggcttcgacaactctc 11145991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 8863878 - 8864215
Alignment:
Q  18 atatcactacctcaacggatgaacaccctcaccactcttgaaagtttgtatctccacagtcttccaaaactagagttttcactatgtgaaggagt---ct 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| || || ||  |||||||||||| |||||| |||||| |||||||||   ||    
T  8863878 atatcactacctcaacggatggacaccctcaccactcttgaaagattgcatttctaccatcttccaaaacttgagtttgcactatatgaaggagttttct 8863977  T
Q  115 tacctcccaaattacaaacaatttctattacatctttgagaataacaaagatgccaccattaattgaatggggtttccaaagtcttacttctcttgcaat 214  Q
    ||||||||||||| |||||||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||     
T  8863978 tacctcccaaattgcaaacaatttatattacatctgtaagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttatctttcaaa 8864077  T
Q  215 attgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaa 314  Q
     |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||  |||||||  |||||||||||||||||||||||||||||    
T  8864078 tttgtatattaaagataatgatgatgttgttcacaccttgttgaaggagcaattgctacccatttccttggtgtttctgtcaataagtaatctctctgaa 8864177  T
Q  315 gtgaaatgcttaggtggaaatgggcttcgacacctctc 352  Q
    | ||||||||||| |||||||||||||||| |||||||    
T  8864178 gcgaaatgcttagatggaaatgggcttcgatacctctc 8864215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 13335651 - 13335746
Alignment:
Q  179 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcc 274  Q
    |||||||||| |||||  ||||||||||||| |||  |||||||||  || | | ||||||||||||||||||||| |||||||||  ||||||||    
T  13335651 tgaatggggtctccaacatcttacttctctttcaagtttgtatattggaggtgacgatgatattgttaacaccttgctgaaggagcggttgctgcc 13335746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 12131049 - 12131089
Alignment:
Q  234 gatgatattgttaacaccttgttgaaggagcaattgctgcc 274  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  12131049 gatgatattgttaacaccttgttgaaggagcagttgctgcc 12131089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 13163727 - 13163822
Alignment:
Q  179 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcc 274  Q
    |||||||||| |||||  ||||||||| ||| |||  |||||||||  || | | ||||||||||||||||||||| |||||||||  ||||||||    
T  13163727 tgaatggggtctccaacatcttacttcgctttcaagtttgtatattggaggtgacgatgatattgttaacaccttgctgaaggagcggttgctgcc 13163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 13173775 - 13173870
Alignment:
Q  179 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcc 274  Q
    |||||||||| |||||  ||||||||||||| |||  ||||||||   || | | ||||||||||||||||||||| |||||||||  ||||||||    
T  13173775 tgaatggggtctccaacatcttacttctctttcaagtttgtatatgggaggttacgatgatattgttaacaccttgctgaaggagcggttgctgcc 13173870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 352
Target Start/End: Complemental strand, 10361072 - 10360953
Alignment:
Q  233 tgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtgga 332  Q
    ||||||||| |||||||||||| ||||||||  |||||| || || ||| |  ||| ||||  |||   | ||||||||||| |||| | ||| | ||||    
T  10361072 tgatgatatagttaacaccttgatgaaggagtcattgctacccgtctcccttgtgtctctggaaatccatcatctctctgaaatgaagtcctttgatgga 10360973  T
Q  333 aatgggcttcgacacctctc 352  Q
    ||||||||||||||||||||    
T  10360972 aatgggcttcgacacctctc 10360953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 9841727 - 9841775
Alignment:
Q  304 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctc 352  Q
    ||||||||||| |||| | ||| | ||||||||||||||||||||||||    
T  9841727 atctctctgaaatgaagtcctttgatggaaatgggcttcgacacctctc 9841775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 10373042 - 10372994
Alignment:
Q  304 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctc 352  Q
    ||||||||||| |||| | ||| | ||||||||||||||||||||||||    
T  10373042 atctctctgaaatgaagtcctttgatggaaatgggcttcgacacctctc 10372994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 13346909 - 13346949
Alignment:
Q  234 gatgatattgttaacaccttgttgaaggagcaattgctgcc 274  Q
    ||||||||||||||||||||| |||||||||  ||||||||    
T  13346909 gatgatattgttaacaccttgctgaaggagcggttgctgcc 13346949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 133213 - 133118
Alignment:
Q  179 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcc 274  Q
    |||||||||| |||||  ||||||||||||| |||  ||||||||   || | | ||||||||||||||||||||| |||||||||  ||||||||    
T  133213 tgaatggggtctccaacatcttacttctctttcaagtttgtatatgggaggttacgatgatattgttaacaccttgctgaaggagcggttgctgcc 133118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 143261 - 143166
Alignment:
Q  179 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcc 274  Q
    |||||||||| |||||  ||||||||| ||| |||  |||||||||  || | | ||||||||||||||||||||| |||||||||  ||||||||    
T  143261 tgaatggggtctccaacatcttacttcgctttcaagtttgtatattggaggtgacgatgatattgttaacaccttgctgaaggagcggttgctgcc 143166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 31677063 - 31676982
Alignment:
Q  240 attgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaat 321  Q
    ||||||||||| || ||||||||| | || |||||| |||||||| ||| |||| |||| | ||||||||||||| ||||||    
T  31677063 attgttaacactttcttgaaggagaagttactgcctatttccttagtgtctctgacaatcactaatctctctgaaatgaaat 31676982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 828674 - 828761
Alignment:
Q  234 gatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaat 321  Q
    |||||||  ||||||||||||||||||||| | ||||| ||  ||| | |  ||| |||| |||||||||||||||||||| ||||||    
T  828674 gatgataacgttaacaccttgttgaaggagaagttgcttcccattttcctcgtgtctctgacaataagtaatctctctgaaatgaaat 828761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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