View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4483_low_7 (Length: 306)
Name: NF4483_low_7
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4483_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 13109174 - 13109450
Alignment:
| Q |
20 |
aagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttatataattagggttacacaaggtggnnnnnnnnngtatcagaat |
119 |
Q |
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| T |
13109174 |
aagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttatataattagggttacacaaggtggaaaaaaaaaatatcagaat |
13109273 |
T |
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| Q |
120 |
cattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatacttgcctttcaagtttctccgaaagttttttggttgatgacatgcc |
219 |
Q |
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| T |
13109274 |
cattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatatttgcctttcaagtttctcttaaagttttttggttgattacatgcc |
13109373 |
T |
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| Q |
220 |
atggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactctaaaatctagttcatctcatt |
296 |
Q |
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| T |
13109374 |
atggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactctaaaatctagttcatctcatt |
13109450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 13039179 - 13039456
Alignment:
| Q |
20 |
aagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttatataattagggttacacaaggtggnnnnnnnnng-tatcagaa |
118 |
Q |
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| T |
13039179 |
aagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttatataattagggttacacaaggtggaaaaaaaaaaatatcagaa |
13039278 |
T |
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| Q |
119 |
tcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatacttgcctttcaagtttctccgaaagttttttggttgatgacatgc |
218 |
Q |
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| T |
13039279 |
tcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatatttgcctttcaagtttctcttaaagttttttggttgattacatgc |
13039378 |
T |
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| Q |
219 |
catggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactctaaaatctagttcatctcatt |
296 |
Q |
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||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13039379 |
catggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactctaaaatctagttcatctcatt |
13039456 |
T |
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