View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4483_low_9 (Length: 290)
Name: NF4483_low_9
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4483_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 20186600 - 20186870
Alignment:
| Q |
1 |
ttaattaagttgtttatctataaggcaccaataattatggagagaaaaaccaaataataaccttagtaacaacaaaaaatcaacctgctgaaatgttcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20186600 |
ttaattaagttgtttatctataaggcaccaataattatggagagaaaaaccaaataataacattagtaacaacaaaaaatcaacctgctgaaatgttcta |
20186699 |
T |
|
| Q |
101 |
gtgtcccaagtcctgatagtaccatcggaagaacaagagcttagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgac |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20186700 |
gtgtcccaagtcctgatagtaccatctgaagaacaagagcttagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgac |
20186799 |
T |
|
| Q |
201 |
ccttgaactctccataatattgacccatcactggtgaatacaatttcactgcgttcgttgaaagtgaaacc |
271 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20186800 |
ccttgcactctccataatattgacccatcactggtgaatacaatttcactgcgttcgttgaaagtgaaacc |
20186870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 20205667 - 20205937
Alignment:
| Q |
1 |
ttaattaagttgtttatctataaggcaccaataattatggagagaaaaaccaaataataaccttagtaacaacaaaaaatcaacctgctgaaatgttcta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20205667 |
ttaattaagttgtttatctataaggcaccaataattatggagagaaaaaccaaataataacattagtaacaacaaaaaatcaacctgctgaaatgttcta |
20205766 |
T |
|
| Q |
101 |
gtgtcccaagtcctgatagtaccatcggaagaacaagagcttagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgac |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205767 |
gtgtcccaagtcctgatagtaccatctgaagaacaagagcttagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgac |
20205866 |
T |
|
| Q |
201 |
ccttgaactctccataatattgacccatcactggtgaatacaatttcactgcgttcgttgaaagtgaaacc |
271 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205867 |
ccttgcactctccataatattgacccatcactggtgaatacaatttcactgcgttcgttgaaagtgaaacc |
20205937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 44290179 - 44290449
Alignment:
| Q |
1 |
ttaattaagttgtttatctataaggcaccaataattatggagagaaaaaccaaataataaccttagtaacaacaaaaaatcaacctgctgaaatgttcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44290179 |
ttaattaagttgtttatctataaggcaccaataattatggagagaaaaaccaaataataacattagtaacaacaaaaaatcaacctgctgaaatgttcta |
44290278 |
T |
|
| Q |
101 |
gtgtcccaagtcctgatagtaccatcggaagaacaagagcttagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgac |
200 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290279 |
gtgtcccaagtcctgatagtaccatctgaagaacaagagcttagaatattgggattagaatgacccgaaaacaaaatctgattgatagttgcagtgtgac |
44290378 |
T |
|
| Q |
201 |
ccttgaactctccataatattgacccatcactggtgaatacaatttcactgcgttcgttgaaagtgaaacc |
271 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44290379 |
ccttgcactctccataatattgacccatcactggtgaatacaatttcactgcgttcgttgaaagtgaaacc |
44290449 |
T |
|
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