View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4484-Insertion-2 (Length: 258)
Name: NF4484-Insertion-2
Description: NF4484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4484-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 24269643 - 24269748
Alignment:
| Q |
8 |
caaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24269643 |
caaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaac |
24269742 |
T |
|
| Q |
108 |
ttaagt |
113 |
Q |
| |
|
|||||| |
|
|
| T |
24269743 |
ttaagt |
24269748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 24269832 - 24269904
Alignment:
| Q |
182 |
cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcac |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24269832 |
cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcac |
24269904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 13604795 - 13604690
Alignment:
| Q |
8 |
caaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaac |
107 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
13604795 |
caaagcatcaagcttcaaatctccaacataatcaacaatcttctctcttgcatcaccccaatataccttagccaccacagtcacctatacacaattcgac |
13604696 |
T |
|
| Q |
108 |
ttaagt |
113 |
Q |
| |
|
|||||| |
|
|
| T |
13604695 |
ttaagt |
13604690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 13604586 - 13604516
Alignment:
| Q |
184 |
tgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcac |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
13604586 |
tgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaagttccacttcatactggtgcac |
13604516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 53004778 - 53004714
Alignment:
| Q |
8 |
caaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccccagtata |
72 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||| |||| |
|
|
| T |
53004778 |
caaagcatcaagcttcaaatccccaacataatcaacaatcttccctcttgcatcaccccaatata |
53004714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 51856018 - 51856076
Alignment:
| Q |
182 |
cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtccac |
239 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
51856018 |
cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtccac |
51856076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 8945204 - 8945259
Alignment:
| Q |
182 |
cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc |
236 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
8945204 |
cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc |
8945259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University