View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4484_high_3 (Length: 487)

Name: NF4484_high_3
Description: NF4484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4484_high_3
NF4484_high_3
[»] chr1 (10 HSPs)
chr1 (16-264)||(21507143-21507397)
chr1 (352-422)||(33615872-33615942)
chr1 (186-346)||(2628225-2628385)
chr1 (280-341)||(13875104-13875165)
chr1 (280-344)||(43356939-43357003)
chr1 (284-341)||(43356839-43356896)
chr1 (134-223)||(30535577-30535666)
chr1 (134-218)||(19466116-19466200)
chr1 (292-343)||(48494341-48494392)
chr1 (284-328)||(10579674-10579718)
[»] chr3 (16 HSPs)
chr3 (134-345)||(31282446-31282657)
chr3 (134-345)||(55423390-55423601)
chr3 (280-344)||(46496881-46496945)
chr3 (152-343)||(46495493-46495684)
chr3 (134-224)||(21515519-21515609)
chr3 (286-345)||(31280966-31281025)
chr3 (286-343)||(55425665-55425722)
chr3 (289-343)||(21515260-21515314)
chr3 (280-343)||(17029658-17029721)
chr3 (292-328)||(26151121-26151157)
chr3 (147-218)||(48254812-48254884)
chr3 (134-224)||(5123254-5123344)
chr3 (134-218)||(3209874-3209959)
chr3 (134-226)||(40244301-40244394)
chr3 (135-210)||(21074188-21074264)
chr3 (134-210)||(53624270-53624346)
[»] chr4 (11 HSPs)
chr4 (134-265)||(28657026-28657157)
chr4 (135-344)||(11243660-11243872)
chr4 (286-345)||(28655567-28655626)
chr4 (241-344)||(28657164-28657267)
chr4 (134-224)||(13533169-13533259)
chr4 (286-318)||(20825459-20825491)
chr4 (134-218)||(34438527-34438611)
chr4 (147-209)||(56000417-56000480)
chr4 (153-226)||(9791701-9791774)
chr4 (147-199)||(10168702-10168755)
chr4 (280-344)||(20827580-20827644)
[»] chr8 (6 HSPs)
chr8 (135-328)||(3138770-3138963)
chr8 (154-224)||(42100035-42100105)
chr8 (280-341)||(42837696-42837757)
chr8 (135-264)||(42835937-42836064)
chr8 (147-209)||(34617118-34617181)
chr8 (283-328)||(23152532-23152577)
[»] chr6 (6 HSPs)
chr6 (134-226)||(7312191-7312283)
chr6 (134-226)||(29677052-29677144)
chr6 (280-345)||(19838485-19838550)
chr6 (291-345)||(29677205-29677259)
chr6 (284-349)||(8286689-8286754)
chr6 (147-239)||(24756985-24757078)
[»] scaffold0176 (1 HSPs)
scaffold0176 (135-343)||(16038-16246)
[»] chr5 (4 HSPs)
chr5 (280-345)||(39881616-39881681)
chr5 (134-224)||(10977140-10977230)
chr5 (149-217)||(43197767-43197835)
chr5 (284-328)||(42382172-42382216)
[»] chr2 (6 HSPs)
chr2 (284-344)||(2717840-2717900)
chr2 (291-345)||(28545020-28545074)
chr2 (147-224)||(7753447-7753524)
chr2 (283-328)||(39110178-39110223)
chr2 (284-345)||(45001051-45001112)
chr2 (284-344)||(7182698-7182758)
[»] chr7 (9 HSPs)
chr7 (134-224)||(9662145-9662235)
chr7 (280-342)||(29861496-29861558)
chr7 (147-224)||(32256317-32256394)
chr7 (154-318)||(44554696-44554859)
chr7 (154-224)||(11501297-11501367)
chr7 (154-224)||(22337300-22337370)
chr7 (158-223)||(7354623-7354688)
chr7 (292-325)||(44553216-44553249)
chr7 (284-348)||(19069951-19070015)
[»] scaffold0034 (1 HSPs)
scaffold0034 (134-223)||(109653-109743)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 21507397 - 21507143
Alignment:
Q  16 atgaagattaagaagaagatgtgggaagaggaagaa------aacaaaaaacaattatttgtaggtgatgcactgttagatacaatagacctccataatc 109  Q
    |||| |||||||||||||||||||||||| ||||||      ||| ||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  21507397 atgatgattaagaagaagatgtgggaagaagaagaagaagaaaaccaaaaacaattagttgtaggtgatgcgccgttagatacaatagacctctataatc 21507298  T
Q  110 tagccgttcctatttttnnnnnnngatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacattt 209  Q
    |||  || ||  ||||        ||||||| || ||||||||||||||||||||||| |||| || |||||||| | ||||||||||||||||||||||    
T  21507297 tagttgtcccctttttgaaaaaaagatcaaacggctgaaattaaaaaattaataaggtctacgatggaccacctacattgttggtccacctaatacattt 21507198  T
Q  210 gaagttaaagttaactggtgtggatcaaacagactgacggagcatatttgaagga 264  Q
    | | |||||||||||||  ||||||||||  ||||||||||||| ||||||||||    
T  21507197 ggaattaaagttaactgacgtggatcaaattgactgacggagcaaatttgaagga 21507143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 33615872 - 33615942
Alignment:
Q  352 atagttgaattacaaagtccaaaatttatttcatcgagccagagtgtctttaatttgttcctacatgttaa 422  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33615872 atagttgaattacaaagaccaaaatttatttcatcgagccagagtgtctttaatttgttcctacatgttaa 33615942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 186 - 346
Target Start/End: Original strand, 2628225 - 2628385
Alignment:
Q  186 aatgttggtccacctaatacatttgaagttaaagttaactggtgtggatcaaacagactgacggagcatatttgaaggatcgaaatnnnnnnnnttaaag 285  Q
    ||||||||||||||||||||||||  |||||||||||||||   |||||||||  | |||||||||||||||||| ||| | ||          ||| ||    
T  2628225 aatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgtctgacggagcatatttgagggaccaaacggaaattttttagag 2628324  T
Q  286 ttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcctat 346  Q
    |||| ||||||||| |||||||||||||||||| | |||||| | ||  ||||||||||||    
T  2628325 ttaagggaccaaattgaaaacaacaaataagttaaaggaccatttataaaattaagcctat 2628385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 13875165 - 13875104
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaag 341  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| | || ||||||||    
T  13875165 ttaaagttaagggatcaaatcgaaaacaacaaataagttgagggaccatttatataattaag 13875104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 43356939 - 43357003
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcct 344  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| | | || |||||||||||    
T  43356939 ttaaagttaagggaccaaatcaaaaacaacaaataagttgagggacgatttatataattaagcct 43357003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 43356896 - 43356839
Alignment:
Q  284 agttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaag 341  Q
    |||||| ||||||||| |||||||||||||||||||| |||||| | |||||||||||    
T  43356896 agttaagggaccaaattgaaaacaacaaataagttgaaggaccatttatgtaattaag 43356839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 30535577 - 30535666
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaa 223  Q
    ||||| |||| | |||||||||||| |||||||| || | || || | ||||||||||||||||||  | |||||||||| |||||||||    
T  30535577 gatcagagggttaaaattaaaaaataaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagctaaagttaa 30535666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 19466116 - 19466200
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaa 218  Q
    ||||||| || ||||||||||||||||||||||| || | || || | |||||||||| |||||||  | |||||||| ||||||    
T  19466116 gatcaaatggctgaaattaaaaaattaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaa 19466200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 48494341 - 48494392
Alignment:
Q  292 gaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcc 343  Q
    |||||||| ||||||||||||||||||||||||| || | | ||||||||||    
T  48494341 gaccaaattgaaaacaacaaataagttgagggactaaacgtttaattaagcc 48494392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 10579674 - 10579718
Alignment:
Q  284 agttaaaggaccaaatcgaaaacaacaaataagttgagggaccaa 328  Q
    |||||| |||||||||||||| ||| ||||||||| |||||||||    
T  10579674 agttaagggaccaaatcgaaaccaaaaaataagttaagggaccaa 10579718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 345
Target Start/End: Original strand, 31282446 - 31282657
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtgga 233  Q
    |||||||  ||||||||||||||||||||||||| |||| || |||||||| || |||||||||||||| | |||||  ||| ||||||||||   ||||    
T  31282446 gatcaaaaagatgaaattaaaaaattaataaggtctacggtggaccacctacaaggttggtccacctaagatatttggggttgaagttaactgaaatgga 31282545  T
Q  234 tcaaacagactgacggagcatatttgaaggatcgaaatnnnnnnnnttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatg 333  Q
    | |||  |||||||||||||||||||||||| | ||||        ||| | |||| |||||| |||||||||||||||||||||||||||||| | ||     
T  31282546 ttaaaatgactgacggagcatatttgaaggaccaaaatgaaaatttttagaattaagggaccatatcgaaaacaacaaataagttgagggaccatttata 31282645  T
Q  334 taattaagccta 345  Q
    ||||||||||||    
T  31282646 taattaagccta 31282657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 134 - 345
Target Start/End: Complemental strand, 55423601 - 55423390
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtgga 233  Q
    |||||||  ||||||||||||||||||||||||| |||| || |||||||| || |||||||||||||| |||||||  ||| ||||||||||   || |    
T  55423601 gatcaaaaagatgaaattaaaaaattaataaggtctacggtggaccacctacaaggttggtccacctaagacatttggggttgaagttaactgaaatgaa 55423502  T
Q  234 tcaaacagactgacggagcatatttgaaggatcgaaatnnnnnnnnttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatg 333  Q
    | |||  |||| ||||||||||||||||||| | ||||        ||| |  ||| |||||| |||||||||||||||||||||||| ||||| | ||     
T  55423501 ttaaaatgacttacggagcatatttgaaggaccaaaatgaaattttttagaaataagggaccatatcgaaaacaacaaataagttgagtgaccatttata 55423402  T
Q  334 taattaagccta 345  Q
    ||||||||||||    
T  55423401 taattaagccta 55423390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 46496881 - 46496945
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcct 344  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  46496881 ttaaagttaagggaccaaatcgaaaacaacaaataagttgagggaccatttatgtaattaagcct 46496945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 343
Target Start/End: Complemental strand, 46495684 - 46495493
Alignment:
Q  152 aaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtggatcaaacagactgacggag 251  Q
    |||||||||||||||| || | || |||||||| ||||||||| |||||||||||||||   |||||||||||||   |||||||||   ||| ||||      
T  46495684 aaaaaattaataaggtctatgatggaccacctacaatgttggttcacctaatacatttgggtttaaagttaactgacatggatcaaattaactaacggga 46495585  T
Q  252 catatttgaaggatcgaaatnnnnnnnnttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcc 343  Q
      ||  ||| ||| | || |        |||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  46495584 tgtacatgagggaccaaattaaaaaaatttaaagttaagggaccaaatcgaaaacaacaaataagttgagggacaatttatgtaattaagcc 46495493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 21515519 - 21515609
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    ||||||| || || |||||||||||||||||||| || | || |||||||| ||| ||| ||||||||||||||||| |||||||||||||    
T  21515519 gatcaaatggctggaattaaaaaattaataaggtatatggtggaccacctacaatattgatccacctaatacatttggagttaaagttaac 21515609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 31281025 - 31280966
Alignment:
Q  286 ttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagccta 345  Q
    |||| |||||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  31281025 ttaagggaccatatcgaaaacaacaaataagttgagggaccatttatgtaattaagccta 31280966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 55425665 - 55425722
Alignment:
Q  286 ttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcc 343  Q
    |||| |||||| |||||||||||||||||||||||||||||| | |||||||||||||    
T  55425665 ttaagggaccatatcgaaaacaacaaataagttgagggaccatttatgtaattaagcc 55425722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 21515314 - 21515260
Alignment:
Q  289 aaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcc 343  Q
    |||||||||||||||||||||||||||||| ||||| || | |||||||||||||    
T  21515314 aaggaccaaatcgaaaacaacaaataagttaagggatcatttatgtaattaagcc 21515260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 17029721 - 17029658
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcc 343  Q
    ||||| |||| ||||||||||||||| ||||||||||||  ||||||| | |||||||||||||    
T  17029721 ttaaaattaagggaccaaatcgaaaagaacaaataagttatgggaccatttatgtaattaagcc 17029658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 26151157 - 26151121
Alignment:
Q  292 gaccaaatcgaaaacaacaaataagttgagggaccaa 328  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26151157 gaccaaattgaaaacaacaaataagttgagggaccaa 26151121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 48254812 - 48254884
Alignment:
Q  147 aaattaaaaaa-ttaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaa 218  Q
    ||||||||||| ||| ||||||||| | || |||||||||||||||||||||||| | |||||| | ||||||    
T  48254812 aaattaaaaaacttagtaaggtttatggtggaccacctataatgttggtccaccttagacatttaatgttaaa 48254884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 5123254 - 5123344
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    ||||||| || | ||||||||||||||||||||| || | |  ||||| || |||||||||||| || | |||||||| |||||| |||||    
T  5123254 gatcaaatggttaaaattaaaaaattaataaggtctatggtagaccacatacaatgttggtccatcttaaacatttgaggttaaaattaac 5123344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 3209874 - 3209959
Alignment:
Q  134 gatcaaagggatgaaattaa-aaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaa 218  Q
    ||||||| || | ||||||| ||||||||||||||||||| || || |  | ||| |||||||||||  |||||||||||||||||    
T  3209874 gatcaaatggttaaaattaacaaaattaataaggtttacgatggactatttttaaggttggtccaccatatacatttgaagttaaa 3209959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 40244394 - 40244301
Alignment:
Q  134 gatcaaagggatgaaattaa-aaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactg 226  Q
    |||||||| | | ||||||| |||||||||||||| |||| || ||||| | |||  ||||||||||  | ||| |||||||||||||||||||    
T  40244394 gatcaaagagttaaaattaacaaaattaataaggtctacgatggaccacttttaagtttggtccaccatagacacttgaagttaaagttaactg 40244301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 21074188 - 21074264
Alignment:
Q  135 atcaaagggatgaaatt-aaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttg 210  Q
    ||||||||| | ||||| |||||||||||||||| || | || || | ||||||||||||||||||  |||||||||    
T  21074188 atcaaagggttaaaattgaaaaaattaataaggtctatggtggactatctataatgttggtccaccatatacatttg 21074264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 53624270 - 53624346
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttg 210  Q
    ||||||| || | ||||| ||||||||||||||| || | || || | ||||||||||||||||||  |||||||||    
T  53624270 gatcaaaaggttaaaattgaaaaattaataaggtctatggtggactatctataatgttggtccaccatatacatttg 53624346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 265
Target Start/End: Original strand, 28657026 - 28657157
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtgga 233  Q
    |||||||  ||||||||||||||||||||||||| |||| || | |||||| || |||||||||||||| |||||||  ||||||||||||||   ||||    
T  28657026 gatcaaaaagatgaaattaaaaaattaataaggtctacggtggatcacctacaaggttggtccacctaagacatttggggttaaagttaactgaaatgga 28657125  T
Q  234 tcaaacagactgacggagcatatttgaaggat 265  Q
    | |||  |||||||| ||||||||||||||||    
T  28657126 ttaaaatgactgacgaagcatatttgaaggat 28657157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 344
Target Start/End: Original strand, 11243660 - 11243872
Alignment:
Q  135 atcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacc---tataatgttggtccacctaatacatttgaagttaaagttaactggtgtg 231  Q
    |||||| || ||||||||||||||||||||| | || | || ||||||   || || |||||||||||||| |||||||   ||||||||||||    ||    
T  11243660 atcaaaaggttgaaattaaaaaattaataagttatatggtggaccaccacctacaaggttggtccacctaagacatttgggattaaagttaactaacatg 11243759  T
Q  232 gatcaaacagactgacggagcatatttgaaggatcgaaatnnnnnnnnttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatca 331  Q
    |||||||| |||||||  | |||||||||| ||| ||||         ||| |||||| |||||||||| |||||||||||||||||||||||||| | |    
T  11243760 gatcaaactgactgacataacatatttgaatgattgaaaaagaaaattttagagttaagggaccaaatctaaaacaacaaataagttgagggaccattta 11243859  T
Q  332 tgtaattaagcct 344  Q
    ||||||| |||||    
T  11243860 tgtaatttagcct 11243872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 28655626 - 28655567
Alignment:
Q  286 ttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagccta 345  Q
    |||| |||||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  28655626 ttaagggaccatatcgaaaacaacaaataagttgagggaccatttatgtaattaagccta 28655567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 28657164 - 28657267
Alignment:
Q  241 gactgacggagcatatttgaaggatcgaaatnnnnnnnnttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaa 340  Q
    |||||||||||||||||||||||| | ||||        ||| | |||| |||||| |||||||||||||||||| ||||||||||| | || |||||||    
T  28657164 gactgacggagcatatttgaaggaccaaaatggaaaattttagaattaagggaccatatcgaaaacaacaaataaattgagggaccatttatataattaa 28657263  T
Q  341 gcct 344  Q
    ||||    
T  28657264 gcct 28657267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 13533169 - 13533259
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    ||||||| || | ||||| ||||||||||||||| || | || || | ||||||||||||||||||  | ||||||||||||||| |||||    
T  13533169 gatcaaatggttaaaattgaaaaattaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaaatttaac 13533259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 20825491 - 20825459
Alignment:
Q  286 ttaaaggaccaaatcgaaaacaacaaataagtt 318  Q
    |||||||||||||||||||||||||||||||||    
T  20825491 ttaaaggaccaaatcgaaaacaacaaataagtt 20825459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 34438611 - 34438527
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaa 218  Q
    ||||||| || ||||||||||||||||||||||| || | || || | |||||||||| |||||||  | |||||||| ||||||    
T  34438611 gatcaaatggttgaaattaaaaaattaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaa 34438527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 56000480 - 56000417
Alignment:
Q  147 aaattaaaaaa-ttaataaggtttacgctgtaccacctataatgttggtccacctaatacattt 209  Q
    ||||||||||| ||| |||||| |||| || |||||||||||||||||||||||| | ||||||    
T  56000480 aaattaaaaaacttagtaaggtctacggtggaccacctataatgttggtccaccttagacattt 56000417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 9791701 - 9791774
Alignment:
Q  153 aaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactg 226  Q
    ||||||||||||||| |||  || |||||||| ||| ||  |||||||||||||||||  ||||| ||||||||    
T  9791701 aaaaattaataaggtctacagtggaccacctacaatatttatccacctaatacatttggggttaatgttaactg 9791774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 10168702 - 10168755
Alignment:
Q  147 aaattaaa-aaattaataaggtttacgctgtaccacctataatgttggtccacc 199  Q
    |||||||| ||||||||||||| |||| || |||| ||||||||||||||||||    
T  10168702 aaattaaataaattaataaggtgtacggtggaccatctataatgttggtccacc 10168755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 20827580 - 20827644
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcct 344  Q
    ||||| |||| || ||||||| ||||||||||||||||| |  ||||| | ||||||||||||||    
T  20827580 ttaaaattaagggtccaaatcaaaaacaacaaataagttaaaagaccatttatgtaattaagcct 20827644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 135 - 328
Target Start/End: Original strand, 3138770 - 3138963
Alignment:
Q  135 atcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtggat 234  Q
    |||||| ||||||||||||||||||||||||||  ||| || |||||| ||  |||||||| |||||||| |||||  ||||||||||||||   |||||    
T  3138770 atcaaatggatgaaattaaaaaattaataaggtcgacggtggaccaccaatggtgttggtctacctaatatatttggggttaaagttaactgacttggat 3138869  T
Q  235 caaacagactgacggagcatatttgaaggatcgaaatnnnnnnnnttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaa 328  Q
    ||||  |||| ||||||||||||| |||||   |||         ||| |||||   |||||||  ||||||||||||||||||||||||||||    
T  3138870 caaattgactaacggagcatatttaaaggactaaaaaggaaaaatttagagttatgagaccaaaatgaaaacaacaaataagttgagggaccaa 3138963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 42100035 - 42100105
Alignment:
Q  154 aaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    |||||||||||||| |||| || ||||| | ||| ||||||||||| || |||||||||||||||||||||    
T  42100035 aaaattaataaggtctacgatggaccacttttaaggttggtccaccaaagacatttgaagttaaagttaac 42100105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 42837696 - 42837757
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaag 341  Q
    |||||| ||||||||||||||||||||||||||||||||  ||||| ||| ||| |||||||    
T  42837696 ttaaagataaaggaccaaatcgaaaacaacaaataagttaggggactaattatgcaattaag 42837757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 42836064 - 42835937
Alignment:
Q  135 atcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtggat 234  Q
    |||||| ||||||||||||||||||||||||||  ||  || || || ||   ||||||||||||||||| |||||  |||||||||||||    | |||    
T  42836064 atcaaatggatgaaattaaaaaattaataaggtcgacagtggactacttac--tgttggtccacctaatatatttggggttaaagttaactcactttgat 42835967  T
Q  235 caaacagactgacggagcatatttgaagga 264  Q
    ||||| |||| ||||| ||||||| |||||    
T  42835966 caaactgactaacggaccatatttaaagga 42835937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 34617118 - 34617181
Alignment:
Q  147 aaattaaaaaattaa-taaggtttacgctgtaccacctataatgttggtccacctaatacattt 209  Q
    ||||||||||||| | |||||| |||| || ||||||| |||||||||||||||| ||||||||    
T  34617118 aaattaaaaaatttagtaaggtctacggtggaccacctgtaatgttggtccaccttatacattt 34617181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 23152532 - 23152577
Alignment:
Q  283 aagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaa 328  Q
    |||||||||||||||| ||||| ||| ||||||||| |||||||||    
T  23152532 aagttaaaggaccaaaacgaaaccaaaaaataagttaagggaccaa 23152577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 7312191 - 7312283
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactg 226  Q
    ||||||| || ||||||||||||||||||||| | |||| || |||||||| |||||||||||| ||||||||||||  ||||||||||||||    
T  7312191 gatcaaatggttgaaattaaaaaattaataagatctacggtgaaccacctacaatgttggtccatctaatacatttggggttaaagttaactg 7312283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 29677052 - 29677144
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactg 226  Q
    |||||||||| || |||||||||||||||| ||| || | || | |||||||||| ||| ||||||||||||||||| |||||||||| ||||    
T  29677052 gatcaaagggctggaattaaaaaattaatagggtatatggtggatcacctataatattgatccacctaatacatttggagttaaagtttactg 29677144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 19838485 - 19838550
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagccta 345  Q
    |||||||||  | ||||||||| |||||||||||||||| ||||||| | | ||||||||||||||    
T  19838485 ttaaagttatggaaccaaatcggaaacaacaaataagttaagggaccgaacgtgtaattaagccta 19838550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 29677205 - 29677259
Alignment:
Q  291 ggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagccta 345  Q
    ||||||||||||||||||||| ||||||  |||||||| | | ||||||||||||    
T  29677205 ggaccaaatcgaaaacaacaattaagttatgggaccaaacgtttaattaagccta 29677259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 8286689 - 8286754
Alignment:
Q  284 agttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcctatatt 349  Q
    |||||| |||||||| ||||| ||| ||||||||| |||| ||||  | |||||||||||||||||    
T  8286689 agttaagggaccaaaacgaaaccaaaaaataagttaagggcccaaaaaagtaattaagcctatatt 8286754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 24757078 - 24756985
Alignment:
Q  147 aaattaaaa-aattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtggatcaaac 239  Q
    ||||||||| |||||||||||| || | |  |||||||| ||||||| |||| ||||||| ||||  ||||||||||||||   ||||||||||    
T  24757078 aaattaaaagaattaataaggtctaaggtagaccacctacaatgttgctccatctaatacttttgtggttaaagttaactgacatggatcaaac 24756985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 135 - 343
Target Start/End: Complemental strand, 16246 - 16038
Alignment:
Q  135 atcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtggat 234  Q
    ||||||||  |||||||| |||||| ||||||| |||  || |||||||| | ||||| || | ||||||| |||  |||||||||||||||   | |||    
T  16246 atcaaaggcctgaaattacaaaatttataaggtctacagtggaccacctacagtgttgatcaaactaatacgttttgagttaaagttaactgacatagat 16147  T
Q  235 caaacagactgacggagcatatttgaaggatcgaaatnnnnnnnnttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgt 334  Q
    ||||| ||||||| || ||||||||| ||| | ||          |||||||||| ||| |||||||||||||||||||||||| |||||||| | || |    
T  16146 caaactgactgacagatcatatttgagggaccaaacaagaaaattttaaagttaagggatcaaatcgaaaacaacaaataagttaagggaccatttatat 16047  T
Q  335 aattaagcc 343  Q
    |||||||||    
T  16046 aattaagcc 16038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 39881616 - 39881681
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagccta 345  Q
    |||||| ||| | ||||||||||||||||||||||||||  ||||| ||| |||||||||||||||    
T  39881616 ttaaagataaggtaccaaatcgaaaacaacaaataagttaggggactaattatgtaattaagccta 39881681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 10977230 - 10977140
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    ||||||| |||| ||||||||||||||||| ||| || | |  ||||| || |||||||||||| || | ||||||||||||||| |||||    
T  10977230 gatcaaatggataaaattaaaaaattaatatggtctatggtagaccacatacaatgttggtccatcttagacatttgaagttaaaattaac 10977140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 43197835 - 43197767
Alignment:
Q  149 attaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaa 217  Q
    |||||||||| ||| || |||||| || ||||||||||||||| || ||||||| |||||||| |||||    
T  43197835 attaaaaaatgaatgagatttacggtgaaccacctataatgttagttcacctaaaacatttgaggttaa 43197767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 42382172 - 42382216
Alignment:
Q  284 agttaaaggaccaaatcgaaaacaacaaataagttgagggaccaa 328  Q
    |||||| |||||||||||||| ||| ||||||||| |||||||||    
T  42382172 agttaagggaccaaatcgaaaccaaaaaataagttaagggaccaa 42382216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 2717840 - 2717900
Alignment:
Q  284 agttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcct 344  Q
    |||||| ||||||||| |||||||||||||||||| ||||| || | ||||||||||||||    
T  2717840 agttaagggaccaaattgaaaacaacaaataagttaagggatcatttatgtaattaagcct 2717900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 28545020 - 28545074
Alignment:
Q  291 ggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagccta 345  Q
    ||||||||||||||||||||||||| || |||||| | | |||||||||||||||    
T  28545020 ggaccaaatcgaaaacaacaaataaattaagggacaatttatgtaattaagccta 28545074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 7753447 - 7753524
Alignment:
Q  147 aaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    ||||||||||||||||| ||| || | || | |||||| ||||||| ||||||  ||||||||| |||||||||||||    
T  7753447 aaattaaaaaattaatacggtctatggtggatcacctacaatgttgatccaccatatacatttggagttaaagttaac 7753524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 39110223 - 39110178
Alignment:
Q  283 aagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaa 328  Q
    |||||||||||||||| ||||| ||| ||||||||| |||||||||    
T  39110223 aagttaaaggaccaaaacgaaaccaaaaaataagttaagggaccaa 39110178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 45001112 - 45001051
Alignment:
Q  284 agttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagccta 345  Q
    ||||||||||||||| ||||| ||| ||||||||| |||||||||    |||||||||||||    
T  45001112 agttaaaggaccaaaacgaaaccaaaaaataagttaagggaccaaatgagtaattaagccta 45001051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 7182698 - 7182758
Alignment:
Q  284 agttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcct 344  Q
    |||||| |||||||| ||||| ||| ||||||||| ||||||||| |  ||||||||||||    
T  7182698 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaacgagtaattaagcct 7182758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 9662145 - 9662235
Alignment:
Q  134 gatcaaagggatgaaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    ||||||| || | ||||| ||||||||||||||| || | || || | ||||||||||||||||||  | ||||||||||||||| |||||    
T  9662145 gatcaaatggttaaaattgaaaaattaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaaatttaac 9662235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 29861558 - 29861496
Alignment:
Q  280 ttaaagttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagc 342  Q
    |||||| ||| ||| ||||||||||||||||||||||||  ||||||| | ||||||||||||    
T  29861558 ttaaagataagggatcaaatcgaaaacaacaaataagttaggggaccagttatgtaattaagc 29861496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 32256317 - 32256394
Alignment:
Q  147 aaattaaaaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    ||||||| ||| || ||||||||||  || ||||| | |||||||||||||||  | |||||||||||||||||||||    
T  32256317 aaattaacaaaatattaaggtttacaatggaccacttttaatgttggtccaccatagacatttgaagttaaagttaac 32256394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 318
Target Start/End: Original strand, 44554696 - 44554859
Alignment:
Q  154 aaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaactggtgtggatcaaacagactgacggagca 253  Q
    |||||||||||| | |||| || ||||  |||||||||||||||||  | ||||||| ||||||||||||  |   ||||||||   |||||||||||||    
T  44554696 aaaattaataagatctacggtggaccat-tataatgttggtccaccatagacatttggagttaaagttaatagacttggatcaatttgactgacggagca 44554794  T
Q  254 tatttgaaggatcgaaatnnnnnnnnttaaagttaaaggaccaaatcgaaaacaacaaataagtt 318  Q
    ||||||| ||| | |||         |||||||||  ||||||||  ||||||||||||||||||    
T  44554795 tatttgagggaccaaaaagaaaaaatttaaagttatgggaccaaaatgaaaacaacaaataagtt 44554859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 11501367 - 11501297
Alignment:
Q  154 aaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    |||||||||||||| |||  || ||||| | ||| |||||||||||  | |||||||||||||||||||||    
T  11501367 aaaattaataaggtctacaatgaaccacttttaaggttggtccaccatagacatttgaagttaaagttaac 11501297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 22337300 - 22337370
Alignment:
Q  154 aaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaac 224  Q
    |||||||||||||| |||| ||||| || | ||| |||||||||||  | ||||||||||||||| |||||    
T  22337300 aaaattaataaggtctacggtgtactacatttaaggttggtccaccatagacatttgaagttaaatttaac 22337370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 7354688 - 7354623
Alignment:
Q  158 ttaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaa 223  Q
    |||||||||| |||| || ||||| ||||||||||||||| || | |||||||  |||||||||||    
T  7354688 ttaataaggtctacgatggaccacttataatgttggtccatcttagacatttgtggttaaagttaa 7354623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 44553249 - 44553216
Alignment:
Q  292 gaccaaatcgaaaacaacaaataagttgagggac 325  Q
    |||||||| |||||||||||||||||||||||||    
T  44553249 gaccaaattgaaaacaacaaataagttgagggac 44553216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 19069951 - 19070015
Alignment:
Q  284 agttaaaggaccaaatcgaaaacaacaaataagttgagggaccaatcatgtaattaagcctatat 348  Q
    |||||| ||||||||  |||| ||| ||||||||| |||||||||  | ||||||||||||||||    
T  19069951 agttaagggaccaaaatgaaaccaaaaaataagttaagggaccaaaaaagtaattaagcctatat 19070015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 109653 - 109743
Alignment:
Q  134 gatcaaagggatgaaattaa-aaaattaataaggtttacgctgtaccacctataatgttggtccacctaatacatttgaagttaaagttaa 223  Q
    ||||||| || | ||||||| |||||||||||||| |||| || || |  | ||| |||||||||||  ||||||||||||||||||||||    
T  109653 gatcaaatggttaaaattaacaaaattaataaggtctacgatggactatttttaaggttggtccaccatatacatttgaagttaaagttaa 109743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University