View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4484_high_6 (Length: 324)
Name: NF4484_high_6
Description: NF4484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4484_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 7726146 - 7725850
Alignment:
| Q |
12 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaatgaaaatactaccaagattgtttgaagatggt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
7726146 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaataaaaagactaccaagattgtttgaagatggt |
7726047 |
T |
|
| Q |
112 |
aaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggcctaatatacctttactag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7726046 |
aaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggcctaatatacctttactag |
7725947 |
T |
|
| Q |
212 |
tttttggtaagtttttaagagggaaatcatcggtaaatgcagccgagtcagtgcaaccagaaataaagtcagggatatggattttagattttggtat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7725946 |
tttttggtaagtttttaagagggaaatcatcggtaaatgcagccgagtcagtgcaaccagaaataaagtcagggatatggattttagattttggtat |
7725850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 7733568 - 7733340
Alignment:
| Q |
12 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaatgaaaatactaccaagattgtttgaagatggt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7733568 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaatgaaaagactaccaagattgtttgaagatggt |
7733469 |
T |
|
| Q |
112 |
aaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggcctaatatacctttactag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7733468 |
aaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
7733369 |
T |
|
| Q |
212 |
tttttggtaagtttttaagagggaaatca |
240 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
7733368 |
tttttggtaagtttttgagagggaaatca |
7733340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 7746334 - 7746645
Alignment:
| Q |
12 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaatgaaaatactaccaagattgtttgaagatggt |
111 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||| |||||||| || | |||| ||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
7746334 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccaccaatgaaaaaactaccaagtttgtttgaagatggt |
7746433 |
T |
|
| Q |
112 |
aaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggcctaatatacctttactag |
211 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7746434 |
aaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
7746533 |
T |
|
| Q |
212 |
tttttggtaagtttttaagagggaaat---------------catcggtaaatgcagccgagtcagtgcaaccagaaataaagtcagggatatggatttt |
296 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
7746534 |
tttttggtaagtttttaagagggaaattatcagtggcagaagcagctgtaaatgcattagagtcagtgcaaccagtaataaagtcagggatttggatttt |
7746633 |
T |
|
| Q |
297 |
agattttggtat |
308 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7746634 |
agattttggtat |
7746645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 7711258 - 7711030
Alignment:
| Q |
12 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaagatcctaccccaccaatgaaaatactaccaagattgtttgaagatggt |
111 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||| |||||||| || | |||| ||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
7711258 |
aaaggggttaataataagaggaatagtagtgagtttaaacttggcaaaattagatggtaccccacctatgaatatactaccaagtttgtttgaagatggt |
7711159 |
T |
|
| Q |
112 |
aaacaaagagcaaacttgttaagaagtttaaaaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggcctaatatacctttactag |
211 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7711158 |
aaacaaagaacaaacttgttaagaattttttgaggagctaatgaaagctgttttggtaatgaaagtggtgttcttgcaaggcctaatatacctttactag |
7711059 |
T |
|
| Q |
212 |
tttttggtaagtttttaagagggaaatca |
240 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
7711058 |
tttttggtaagtttttgagagggaaatca |
7711030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 7699138 - 7698999
Alignment:
| Q |
97 |
ttgtttgaagatggtaaacaaagagcaaacttgttaagaagtttaa---aaggagctaatgaaagctgttttggtaatgacagtggtgttcttgcaaggc |
193 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| ||| ||| || | |||||||||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
7699138 |
ttgtttgaagatggtaaacaaagagcaaatttgttaggaagcttatgagaagaagatgatgaaagctgttttggtagtgaaagttttgttcttgcaaggc |
7699039 |
T |
|
| Q |
194 |
ctaatatacctttactagtttttggtaagtttttaagagg |
233 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7699038 |
ctaatatccctttactagtttttggtaagtttttaagagg |
7698999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 7748373 - 7748329
Alignment:
| Q |
97 |
ttgtttgaagatggtaaacaaagagcaaacttgttaagaagttta |
141 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
7748373 |
ttgtttgaagatggtaaacaaagtgcaaacttgttaggaagttta |
7748329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 7699235 - 7699184
Alignment:
| Q |
12 |
aaagggattaataacaagaggaactttagtgagttgaaacttggaaagagaa |
63 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
7699235 |
aaaggggttaataacaagaggaattttagtgagttgaaacttgaaaaaagaa |
7699184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 7711002 - 7710950
Alignment:
| Q |
256 |
gagtcagtgcaaccagaaataaagtcagggatatggattttagattttggtat |
308 |
Q |
| |
|
||||||||||||||||| |||||||||| || | |||||||||||||||||| |
|
|
| T |
7711002 |
gagtcagtgcaaccagagataaagtcagagactttgattttagattttggtat |
7710950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 7733312 - 7733260
Alignment:
| Q |
256 |
gagtcagtgcaaccagaaataaagtcagggatatggattttagattttggtat |
308 |
Q |
| |
|
||||||||||||||||| |||||||||| || | |||||||||||||||||| |
|
|
| T |
7733312 |
gagtcagtgcaaccagagataaagtcagagactttgattttagattttggtat |
7733260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University