View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4484_low_11 (Length: 239)
Name: NF4484_low_11
Description: NF4484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4484_low_11 |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 18342984 - 18342867
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342984 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
18342885 |
T |
|
| Q |
115 |
atcagggctgtaattgta |
132 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
18342884 |
atcagggctgtaattgta |
18342867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 24269601 - 24269647
Alignment:
| Q |
178 |
gtagtacctttgtatagcacccaaacctctgctacccataaccaaag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24269601 |
gtagtacctttgtatagcacccaaacctctgctacccataaccaaag |
24269647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 48288862 - 48288822
Alignment:
| Q |
76 |
aaagcagtaccaaattcatctttagaaagatctgaagtgat |
116 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
48288862 |
aaaggagtatcaaattcatctttagaaagatctgaagtgat |
48288822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 36840757 - 36840640
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840757 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
36840658 |
T |
|
| Q |
115 |
atcagggctgtaattgta |
132 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
36840657 |
atcagggctgtaattgta |
36840640 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 46699234 - 46699127
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46699234 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaataaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
46699135 |
T |
|
| Q |
115 |
atcagggc |
122 |
Q |
| |
|
|||||||| |
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|
| T |
46699134 |
atcagggc |
46699127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 53004820 - 53004774
Alignment:
| Q |
178 |
gtagtacctttgtatagcacccaaacctctgctacccataaccaaag |
224 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
53004820 |
gtagtacctttgtatgacacccaaacctctgctacccataatcaaag |
53004774 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 164380 - 164497
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
164380 |
cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctgaagtg |
164479 |
T |
|
| Q |
115 |
atcagggctgtaattgta |
132 |
Q |
| |
|
||||||| ||||| |||| |
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|
| T |
164480 |
atcagggttgtaactgta |
164497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 14249346 - 14249229
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
14249346 |
cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctgaagtg |
14249247 |
T |
|
| Q |
115 |
atcagggctgtaattgta |
132 |
Q |
| |
|
||||||| ||||| |||| |
|
|
| T |
14249246 |
atcagggttgtaactgta |
14249229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 13604837 - 13604791
Alignment:
| Q |
178 |
gtagtacctttgtatagcacccaaacctctgctacccataaccaaag |
224 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
13604837 |
gtagtacctttgtatggcacccaaacctctggtacccataaccaaag |
13604791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 733 - 850
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||||||| || |||||||||| ||||| |||||||||||||| || || |||||||||| |||||| |
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|
| T |
733 |
cataggagctagtaatcgccgatatgctcatattggtgacgttattgttgctgtgatcaaggaagcagtaccaaatacacctctagaaagatcagaagtg |
832 |
T |
|
| Q |
115 |
atcagggctgtaattgta |
132 |
Q |
| |
|
||||| |||||||||||| |
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|
| T |
833 |
atcagagctgtaattgta |
850 |
T |
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