View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4484_low_4 (Length: 407)
Name: NF4484_low_4
Description: NF4484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4484_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 391
Target Start/End: Complemental strand, 325746 - 325346
Alignment:
| Q |
3 |
gcataggagccaaaactatgaataaattatgaaagattgatgaggattggtattaattaactaaaccattaatcatcagaaattatgtagaagaaaaaat |
102 |
Q |
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| T |
325746 |
gcataggagccaaaactatgaataaattatgaaagattgatgaggattggtattaattaactaaaccattaatcatcagaaattatgtagaagaaaaaat |
325647 |
T |
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| Q |
103 |
aacatcattaatctcttgtgtacaaagatattaatcattattctaaactgtgttctgcaacggcaattatgaccataaaataaaggttttagagattttc |
202 |
Q |
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| T |
325646 |
aacatcattaatctcttgtgtacaaagatattaatcattattctaaactgtgttctgcaacggcaattatgaccataaaataaaggttttagagattttc |
325547 |
T |
|
| Q |
203 |
acaaacacatgagactgcatcgactgcaatcgcaatttaaaatcacgatgcataggcaatgtagaagtttgcag------------cgtggcgaaagcaa |
290 |
Q |
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| T |
325546 |
acaaacacatgagacagcatcgactgcaatcgcaatttaaaatcacgatgcataggcaatgtagaagtttgcagcgtaactaaaaccgtggcgaaagcaa |
325447 |
T |
|
| Q |
291 |
tttagaattaaaatattaatatgaatgaaaaaataaggtaccagatcgcagttgtcgcgttcgaagtcgagaattttgatggcgacgatttcattgaaag |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325446 |
tttagaattaaaatattaatatgaatgaaaaaataaggtaccagatcgcagttgtcgcgttcgaagtcgagaattttgatggcgacgatttcattgaaag |
325347 |
T |
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| Q |
391 |
a |
391 |
Q |
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| T |
325346 |
a |
325346 |
T |
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