View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4484_low_7 (Length: 291)
Name: NF4484_low_7
Description: NF4484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4484_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 22275001 - 22275198
Alignment:
| Q |
1 |
tcaacaaattatatagttagtgaatgtctatgctagtaactagtaaagttaatgtgatagctatttcctattttgttatagtagttaagagttagttaca |
100 |
Q |
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| T |
22275001 |
tcaacaaattatatagttagtgaatgtctatgctagtaactagtaaagttaatgtgatagctatttcctattttgttttagtagttaagagttagttaca |
22275100 |
T |
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| Q |
101 |
tccacttcaaactaactgattgtgaagggcaacttataaataaaaccgataggtaagtgtagctagctactatcagtatgataggatgatcatttttgtg |
200 |
Q |
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| T |
22275101 |
tccacttcaaactaactgattgtgaagggcaaattataaataaaaccgataggtaagtg----tagctactatcagtatgataggatgatcatttttgtg |
22275196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 22276301 - 22276393
Alignment:
| Q |
199 |
tgagaagaattcattacgtatgtgatataaagttttggtacacgtccgttcgtagtactagtattatcaaattaagtatataagttatcttaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| | |||||||||||||||||||||||| |
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| T |
22276301 |
tgagaagaattcattacgtatgtgatataaagttccggtacacgtcggttcgtagtactaatattacctaattaagtatataagttatcttaa |
22276393 |
T |
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