View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4485-Insertion-1 (Length: 1020)

Name: NF4485-Insertion-1
Description: NF4485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4485-Insertion-1
NF4485-Insertion-1
[»] chr4 (12 HSPs)
chr4 (513-952)||(1804968-1805409)
chr4 (374-515)||(47487831-47487971)
chr4 (374-509)||(47489273-47489407)
chr4 (263-400)||(38230359-38230498)
chr4 (268-340)||(34488363-34488435)
chr4 (374-512)||(51987152-51987291)
chr4 (373-438)||(38229392-38229457)
chr4 (456-507)||(32335851-32335902)
chr4 (464-507)||(32336082-32336125)
chr4 (388-438)||(34486933-34486983)
chr4 (463-510)||(51986232-51986279)
chr4 (481-514)||(40259819-40259852)
[»] chr1 (12 HSPs)
chr1 (201-499)||(33850950-33851250)
chr1 (201-499)||(33942728-33943028)
chr1 (374-512)||(50269307-50269444)
chr1 (454-515)||(46209533-46209594)
chr1 (403-509)||(42887755-42887861)
chr1 (74-147)||(33851269-33851342)
chr1 (74-147)||(33942636-33942709)
chr1 (620-719)||(41465901-41465993)
chr1 (388-436)||(33942072-33942120)
chr1 (454-512)||(46208009-46208067)
chr1 (372-433)||(35477608-35477669)
chr1 (464-512)||(50269541-50269590)
[»] chr7 (9 HSPs)
chr7 (270-511)||(28087563-28087805)
chr7 (372-515)||(28086469-28086611)
chr7 (351-437)||(44255547-44255632)
chr7 (456-512)||(45782021-45782077)
chr7 (456-515)||(24730981-24731040)
chr7 (454-514)||(1920931-1920991)
chr7 (351-433)||(33735064-33735147)
chr7 (454-515)||(33734980-33735040)
chr7 (456-513)||(38723029-38723086)
[»] chr3 (8 HSPs)
chr3 (553-782)||(32320848-32321070)
chr3 (295-512)||(22341231-22341449)
chr3 (272-507)||(53195559-53195796)
chr3 (372-512)||(22341770-22341908)
chr3 (457-514)||(37282952-37283009)
chr3 (456-513)||(2683198-2683255)
chr3 (454-509)||(46692968-46693023)
chr3 (834-878)||(32320751-32320795)
[»] chr5 (6 HSPs)
chr5 (263-474)||(37255905-37256117)
chr5 (372-514)||(37253398-37253540)
chr5 (405-511)||(21550031-21550137)
chr5 (457-509)||(21550365-21550417)
chr5 (456-515)||(38545504-38545563)
chr5 (464-513)||(38545274-38545323)
[»] chr8 (9 HSPs)
chr8 (372-512)||(29636865-29637005)
chr8 (303-445)||(41440516-41440660)
chr8 (263-420)||(39977338-39977497)
chr8 (74-146)||(41440719-41440791)
chr8 (620-662)||(2359227-2359269)
chr8 (459-512)||(8137539-8137592)
chr8 (291-340)||(19437477-19437526)
chr8 (291-340)||(19573626-19573675)
chr8 (372-433)||(41441259-41441320)
[»] chr2 (12 HSPs)
chr2 (374-513)||(45231485-45231624)
chr2 (9-73)||(44858420-44858483)
chr2 (374-513)||(45230040-45230180)
chr2 (454-515)||(5326193-5326254)
chr2 (538-601)||(6639970-6640033)
chr2 (454-512)||(20193222-20193280)
chr2 (456-513)||(19194073-19194130)
chr2 (263-422)||(35606868-35607028)
chr2 (375-499)||(5327168-5327292)
chr2 (454-513)||(20188308-20188367)
chr2 (456-513)||(35935367-35935424)
chr2 (456-513)||(35844739-35844796)
[»] chr6 (3 HSPs)
chr6 (375-515)||(655523-655663)
chr6 (456-513)||(9362741-9362798)
chr6 (459-515)||(13118569-13118625)
[»] scaffold0735 (1 HSPs)
scaffold0735 (403-509)||(708-814)
[»] scaffold0169 (1 HSPs)
scaffold0169 (454-515)||(24999-25060)
[»] scaffold0210 (2 HSPs)
scaffold0210 (351-513)||(20104-20266)
scaffold0210 (351-513)||(27996-28158)
[»] scaffold0010 (1 HSPs)
scaffold0010 (456-513)||(128350-128407)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 513 - 952
Target Start/End: Complemental strand, 1805409 - 1804968
Alignment:
Q  513 taactattattacttccttaagataagtaaacctcattgcaacaaggagcacaaatcatgcatcttctcttgtaatgcttgcacctatctaacaatgaaa 612  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  1805409 taactactgttacttccttaagataagtaaacctcattgcaacaaggagcacaaatcatgcaacttttcctgtaatgcttgcacctatctaacaatgaaa 1805310  T
Q  613 atttgaatcaaaatgaaaactttgaggaaaatagtggaagaatgagaaatgctcatatttcatcttcccaaaatcgagaccttcaatgacaaaaagggtg 712  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  1805309 atttgaatcaaaatgaaagctttgaggaaaatagtggaagaatgagaaatgcccatatttcattttcccaaaatcgagaccttcaatgacataaagggtg 1805210  T
Q  713 aaggagaattgaactagatttgtttgaaggagaattgttgatgtggtgctcgatagacggtggtgagagatattaggaagagagagaatggttagggaat 812  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||| || ||||||||||||||||||    
T  1805209 aaggagagttgagctagatttgtttgaaggagaattgttggtgtggtgctcaagagacggtggtgagagagattaggaggaaagagaatggttagggaat 1805110  T
Q  813 gaaaaacaatcaagtgctgagagagcatcatagtactgtgtactttatttgatcaagtggttaaaattaaattgaccaatggtgagaaaggattcacctt 912  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||    
T  1805109 gaaaaacaatcaagtgctgagagagcatcatagtactatgtactttatttgatcaagtggttaaaatcaaactgacccatgatgagaaaggattcacctt 1805010  T
Q  913 tcctatg-taaatg-cacattctttcttaggagagtcaaact 952  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  1805009 tcctatgttaaatgtcacattctttcttaggagagtcaaact 1804968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 374 - 515
Target Start/End: Complemental strand, 47487971 - 47487831
Alignment:
Q  374 ctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgct 473  Q
    ||||||||  |||||||| ||||||||| | |||||||||||||||| || | |||||||||||| |||||         |||| |||||||||||||||    
T  47487971 ctttgacccggtcaaaataagagggggcctctgagttgcaaaagggg-tggagttagggggctgaaaagtgattttttttaataaggggccaaaattgct 47487873  T
Q  474 atggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    | | |||||||||||||||| |||||||||||||||||||||    
T  47487872 acgaagccaaacatagggggtcaaaagtgcattttagcctaa 47487831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 374 - 509
Target Start/End: Original strand, 47489273 - 47489407
Alignment:
Q  374 ctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgct 473  Q
    ||||||||  |||||||| |||||||||||||| |||||||||||||||||| |||||||| ||  |||||         |||| |||||||||||||||    
T  47489273 ctttgacctggtcaaaatcagagggggcttatgggttgcaaaagggggtgaagttagggggttggaaagtgattttttttaatatggggccaaaattgct 47489372  T
Q  474 atggagccaaacatagggggccaaaagtgcatttta 509  Q
    | |||||| |||||| ||||||||||||||||||||    
T  47489373 acggagcctaacata-ggggccaaaagtgcatttta 47489407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 263 - 400
Target Start/End: Original strand, 38230359 - 38230498
Alignment:
Q  263 aaggcacacaataacacttaaattgagccttttaattttgaccactgatttaatcctaaggctattaattattgctataa--nnnnnnnctttaaattta 360  Q
    |||| ||||||||||||||| |||||  |||||||| ||||||| ||||||||||||||||||||||||||||  ||| |          ||||||||||    
T  38230359 aagggacacaataacacttacattgaatcttttaatgttgaccattgatttaatcctaaggctattaattattcttatcattctttttcatttaaattta 38230458  T
Q  361 atttaataatagcctttgaccgagtcaaaattagaggggg 400  Q
    ||||| ||||||||||||| |  |||||||||||||||||    
T  38230459 atttagtaatagcctttgatcaggtcaaaattagaggggg 38230498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 34488363 - 34488435
Alignment:
Q  268 acacaataacacttaaattgagccttttaattttgaccactgatttaatcctaaggctattaattattgctat 340  Q
    ||||||||||||||| |||||| |||||||| | ||||| |||||||||||||||||||||||||||| ||||    
T  34488363 acacaataacacttatattgagtcttttaatctcgaccattgatttaatcctaaggctattaattattcctat 34488435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 374 - 512
Target Start/End: Original strand, 51987152 - 51987291
Alignment:
Q  374 ctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnn-aatagggggccaaaattgc 472  Q
    |||||| | ||||||||| ||||||||  ||||||||||||||||| ||||| ||||||||  || |||||          ||||| ||| |||||||||    
T  51987152 ctttgatccagtcaaaatcagagggggtctatgagttgcaaaagggtgtgaagttagggggtcgaaaagtgatttttttttaatagagggtcaaaattgc 51987251  T
Q  473 tatggagccaaacatagggggccaaaagtgcattttagcc 512  Q
    ||||||| |||||||||| |||||||  ||||||||||||    
T  51987252 tatggagtcaaacataggaggccaaagttgcattttagcc 51987291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 38229457 - 38229392
Alignment:
Q  373 cctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctga 438  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||  | |||| ||||||||||||    
T  38229457 cctttgaccaagtcaaaatcagagggggcttatgggttgcaaaagcagatgaagttagggggctga 38229392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 456 - 507
Target Start/End: Complemental strand, 32335902 - 32335851
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattt 507  Q
    |||||||| |||||||||| || | |||||||||||||||||||||||||||    
T  32335902 tagggggctaaaattgctacggtggcaaacatagggggccaaaagtgcattt 32335851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 464 - 507
Target Start/End: Original strand, 32336082 - 32336125
Alignment:
Q  464 caaaattgctatggagccaaacatagggggccaaaagtgcattt 507  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  32336082 caaaattgctatggtggcaaacatagggggccaaaagtgcattt 32336125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 34486983 - 34486933
Alignment:
Q  388 aaattagagggggcttatgagttgcaaaagggggtgaaattagggggctga 438  Q
    |||| |||| |||| ||||||||||||||||||||||| ||||||||||||    
T  34486983 aaatcagagagggcatatgagttgcaaaagggggtgaagttagggggctga 34486933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 510
Target Start/End: Complemental strand, 51986279 - 51986232
Alignment:
Q  463 ccaaaattgctatggagccaaacatagggggccaaaagtgcattttag 510  Q
    |||||||||||| |||| ||||||||| || |||||||||||||||||    
T  51986279 ccaaaattgctacggagtcaaacatagaggaccaaaagtgcattttag 51986232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 481 - 514
Target Start/End: Original strand, 40259819 - 40259852
Alignment:
Q  481 caaacatagggggccaaaagtgcattttagccta 514  Q
    ||||||||||||||||||||||||||| ||||||    
T  40259819 caaacatagggggccaaaagtgcatttaagccta 40259852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 3e-54; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 201 - 499
Target Start/End: Complemental strand, 33851250 - 33850950
Alignment:
Q  201 tgtgaacaaataatctagatttgaaaaacccatacacaaaagagagatgaaagagacatgtaaaggcacacaataacacttaaattgagccttttaattt 300  Q
    ||||||||||||| || ||||||||||||||||| |||||| ||||| |  |||||| ||| |||| | ||||||||||| |||||||  |||| ||  |    
T  33851250 tgtgaacaaataacctggatttgaaaaacccatatacaaaatagagacgtgagagacctgtgaagggatacaataacactaaaattgaatctttaaaact 33851151  T
Q  301 tgaccactgatttaatcctaaggctattaattattgctataannnnnnnc--tttaaatttaatttaataatagcctttgaccgagtcaaaattagaggg 398  Q
    ||||||||||||||||||||||||||||||||||| |||| |       |  ||||||||||||| ||||||||||||||||   |||||||||||||||    
T  33851150 tgaccactgatttaatcctaaggctattaattatttctatcattcttttccatttaaatttaattcaataatagcctttgacttggtcaaaattagaggg 33851051  T
Q  399 ggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgctatggagccaaacatagggggccaaa 498  Q
    ||| ||||||||||||||||||| ||| |||||||||||| ||||||        | || ||||||||||||||||    | ||||||||||||||||||    
T  33851050 ggcctatgagttgcaaaagggggcgaagttagggggctgaaaagtggtattttttattatggggccaaaattgctactttgacaaacatagggggccaaa 33850951  T
Q  499 a 499  Q
    |    
T  33850950 a 33850950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 201 - 499
Target Start/End: Original strand, 33942728 - 33943028
Alignment:
Q  201 tgtgaacaaataatctagatttgaaaaacccatacacaaaagagagatgaaagagacatgtaaaggcacacaataacacttaaattgagccttttaattt 300  Q
    ||||||||||||| || ||||||||||||||||| |||||| ||||| |  |||||| ||| |||| | ||||||||||| |||||||  |||| ||  |    
T  33942728 tgtgaacaaataacctggatttgaaaaacccatatacaaaatagagacgtgagagacctgtgaagggatacaataacactaaaattgaatctttaaaact 33942827  T
Q  301 tgaccactgatttaatcctaaggctattaattattgctataannnnnnnc--tttaaatttaatttaataatagcctttgaccgagtcaaaattagaggg 398  Q
    ||||||||||||||||||||||||||||||||||| |||| |       |  ||||||||||||| ||||||||||||||||   |||||||||||||||    
T  33942828 tgaccactgatttaatcctaaggctattaattatttctatcattcttttccatttaaatttaattcaataatagcctttgacttggtcaaaattagaggg 33942927  T
Q  399 ggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgctatggagccaaacatagggggccaaa 498  Q
    ||| ||||||||||||||||||| ||| |||||||||||| ||||||        | || ||||||||||||||||    | ||||||||||||||||||    
T  33942928 ggcctatgagttgcaaaagggggcgaagttagggggctgaaaagtggtattttttattatggggccaaaattgctactttgacaaacatagggggccaaa 33943027  T
Q  499 a 499  Q
    |    
T  33943028 a 33943028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 374 - 512
Target Start/End: Complemental strand, 50269444 - 50269307
Alignment:
Q  374 ctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgct 473  Q
    |||||||| ||||||||| ||||||||    |||||||||||||||||||||||||||||||||  |||||         |||| |||||||||||||||    
T  50269444 ctttgacccagtcaaaatcagagggggtcactgagttgcaaaagggggtgaaattagggggctggaaagtgattttttttaata-ggggccaaaattgct 50269346  T
Q  474 atggagccaaacatagggggccaaaagtgcattttagcc 512  Q
    | | ||  |||||||||||| ||||||||||||||||||    
T  50269345 acgaaggtaaacatagggggtcaaaagtgcattttagcc 50269307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 454 - 515
Target Start/End: Original strand, 46209533 - 46209594
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  46209533 aataggaggccaaaattgctacggagccaaacatagggggctaaaagtgcattttagcctaa 46209594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 403 - 509
Target Start/End: Original strand, 42887755 - 42887861
Alignment:
Q  403 tatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgctatggagccaaacatagggggccaaaagtg 502  Q
    |||||||||||||||||||| ||||| ||||||||| |||||         |||||||| | |||||||||||||||||||||||||| || |||| |||    
T  42887755 tatgagttgcaaaagggggtaaaattggggggctgaaaagtgtttttttttaataggggacaaaaattgctatggagccaaacataggaggtcaaatgtg 42887854  T
Q  503 catttta 509  Q
    |||||||    
T  42887855 catttta 42887861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 33851342 - 33851269
Alignment:
Q  74 gatttttgaaactctaaaacgaaaatgaacaatatttttatcaattgaagtggcaaagaaaccaatcacgaagg 147  Q
    |||||||||||||| |||| ||||  ||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  33851342 gatttttgaaactccaaaaggaaagggaacaatctttttatcaattgaagtggcaaagaaacaaatcatgaagg 33851269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 33942636 - 33942709
Alignment:
Q  74 gatttttgaaactctaaaacgaaaatgaacaatatttttatcaattgaagtggcaaagaaaccaatcacgaagg 147  Q
    |||||||||||||| |||| ||||  ||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  33942636 gatttttgaaactccaaaaggaaagggaacaatctttttatcaattgaagtggcaaagaaacaaatcatgaagg 33942709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 719
Target Start/End: Original strand, 41465901 - 41465993
Alignment:
Q  620 tcaaaatgaaaactttgaggaaaatagtggaagaatgagaaatgctcatatttcatcttcccaaaatcgagaccttcaatgacaaaaagggtgaaggaga 719  Q
    ||||||||||| |||||||||||||||| |||||||||||||| || || |      || |||||||| |||| |||||||||||||||| |||||||||    
T  41465901 tcaaaatgaaagctttgaggaaaatagtagaagaatgagaaatact-atct------ttgccaaaatcaagacgttcaatgacaaaaaggctgaaggaga 41465993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 33942120 - 33942072
Alignment:
Q  388 aaattagagggggcttatgagttgcaaaagggggtgaaattagggggct 436  Q
    |||||||||||||| ||||||||| |||||||| |||| ||||||||||    
T  33942120 aaattagagggggcctatgagttgtaaaaggggatgaagttagggggct 33942072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 454 - 512
Target Start/End: Complemental strand, 46208067 - 46208009
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcc 512  Q
    |||||||||||||||||||||  || |||||||||| ||  ||||| ||||||||||||    
T  46208067 aatagggggccaaaattgctacagaaccaaacatagaggatcaaaaatgcattttagcc 46208009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 35477669 - 35477608
Alignment:
Q  372 gcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggg 433  Q
    |||||||||||  ||||||||| || |||| |||| |||||||||||||| ||| |||||||    
T  35477669 gcctttgaccggatcaaaattaaagagggcctatgggttgcaaaagggggggaagttagggg 35477608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 50269541 - 50269590
Alignment:
Q  464 caaaattgctatggagccaaacatagggg-gccaaaagtgcattttagcc 512  Q
    ||||||||||| ||||  ||||||||||| ||||||||||||||||||||    
T  50269541 caaaattgctacggaggtaaacataggggggccaaaagtgcattttagcc 50269590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 2e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 270 - 511
Target Start/End: Original strand, 28087563 - 28087805
Alignment:
Q  270 acaataacacttaaattgagccttttaattttgaccactgatttaatcctaaggctattaattattgctataannnnnnnc-tttaaatttaatttaata 368  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||||| |||| |       | ||||||||||||||||||    
T  28087563 acaataacacttaaattgagtcttttaatcttgaccactgatttaaccctaagggtattaattattcctatcattttttccatttaaatttaatttaata 28087662  T
Q  369 atagcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaa 468  Q
    |||||||||||| | |||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||  |||||         |||| | ||||||||    
T  28087663 atagcctttgactgggtcaaaattagagggggcctatgagttgcaaaagtgggcgaagttagggggctggaaagtgtttttttttaatatgaggccaaaa 28087762  T
Q  469 ttgctatggagccaaacatagggggccaaaagtgcattttagc 511  Q
    |||||| |||| |||| ||| ||||||||||||||||||||||    
T  28087763 ttgctacggagtcaaatataaggggccaaaagtgcattttagc 28087805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 372 - 515
Target Start/End: Complemental strand, 28086611 - 28086469
Alignment:
Q  372 gcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattg 471  Q
    |||||||||| ||| ||||||||||||| || || ||||||||||||||||||| |||||||||||  || ||         ||| ||||||||||||||    
T  28086611 gcctttgaccaagtgaaaattagaggggcct-ataagttgcaaaagggggtgaagttagggggctggaaaatgattttttttaatcgggggccaaaattg 28086513  T
Q  472 ctatggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    |||  |||||||||||| |||| |||||||||||||||||||||    
T  28086512 ctacagagccaaacataagggggcaaaagtgcattttagcctaa 28086469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 351 - 437
Target Start/End: Complemental strand, 44255632 - 44255547
Alignment:
Q  351 tttaaatttaatttaataatagcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctg 437  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||| || ||||| |||||||||||||| || |||||||||||    
T  44255632 tttaaatttaattcaatgatagcctttgaccgggtcaaaattagagggagcatatgaattgcaaaagggggt-aagttagggggctg 44255547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 45782077 - 45782021
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcc 512  Q
    ||||||||||||||||||| || | |||||||||||| |||||||||||||| ||||    
T  45782077 tagggggccaaaattgctacggtggcaaacataggggaccaaaagtgcatttaagcc 45782021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 456 - 515
Target Start/End: Original strand, 24730981 - 24731040
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    ||||||||||||||||||| || | |||||||||||| |||||||| ||||| |||||||    
T  24730981 tagggggccaaaattgctacggtgacaaacataggggaccaaaagtacatttaagcctaa 24731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 454 - 514
Target Start/End: Complemental strand, 1920991 - 1920931
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagccta 514  Q
    |||||||||||||||||| || |  | ||||||||||||||||||||||| ||| ||||||    
T  1920991 aatagggggccaaaattgttacgatggcaaacatagggggccaaaagtgcgtttaagccta 1920931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 33735147 - 33735064
Alignment:
Q  351 tttaaatttaatttaataatagcctttgaccgagtcaaaattaga-gggggcttatgagttgcaaaagggggtgaaattagggg 433  Q
    ||||||||||||| |||||||||||||||    |||||||| ||| |||||| ||| | |||||||||||| |||| |||||||    
T  33735147 tttaaatttaattcaataatagcctttgatttggtcaaaatcagaggggggcctataaattgcaaaaggggatgaagttagggg 33735064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 33735040 - 33734980
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    ||||||| |||||||||| || | ||||||||||| |||| ||||| |||||||||||||||    
T  33735040 aatagggagccaaaattgatacgcagccaaacataagggg-caaaaatgcattttagcctaa 33734980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 38723029 - 38723086
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    ||||||||||||| ||||| |  | |||||||||||| |||||||||||||| |||||    
T  38723029 tagggggccaaaactgctacgatggcaaacataggggtccaaaagtgcatttaagcct 38723086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 1e-47; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 553 - 782
Target Start/End: Complemental strand, 32321070 - 32320848
Alignment:
Q  553 aacaaggagcacaaatcatgcatcttctcttgtaatgcttgcacctatctaacaatgaaaatttgaatcaaaatgaaaactttgaggaaaatagtggaag 652  Q
    |||||||||||  |||  |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  32321070 aacaaggagcatgaatattgcatcttttcttataatgcttgcacctatcaaacaatgaaaatttgaatcaaaatggaagctttgagaaaaatagtggaag 32320971  T
Q  653 aatgagaaatgctcatatttcatcttcccaaaatcgagaccttcaatgacaaaaagggtgaaggagaattgaactagatttgtttgaa-ggagaattgtt 751  Q
    |||||||||| | |||||||||||||||||| || ||||| ||||||||        |||||||||| ||||| | |||||||||||| ||||||||| |    
T  32320970 aatgagaaatacccatatttcatcttcccaagattgagacgttcaatga--------gtgaaggagagttgaaatcgatttgtttgaagggagaattgct 32320879  T
Q  752 gatgtggtgctcgatagacggtggtgagaga 782  Q
    | ||||||||| || |  |||||||||||||    
T  32320878 ggtgtggtgctggacaagcggtggtgagaga 32320848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 295 - 512
Target Start/End: Complemental strand, 22341449 - 22341231
Alignment:
Q  295 taattttgaccactgatttaatcctaaggctattaattattgctataannnnnnnc-tttaaatttaatttaataatagcctttgaccgagtcaaaatta 393  Q
    |||| ||||||||| |||||||||||||||||||||||||| |||| |       | ||||||||||||| |  | | ||||||||||| ||||||||||    
T  22341449 taatcttgaccactaatttaatcctaaggctattaattattcctatcattttttccatttaaatttaattaacaagtggcctttgaccgggtcaaaatta 22341350  T
Q  394 gagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgctatggagccaaacataggggg 493  Q
     ||||||||||||| |||||||| |||||||| |||||||||||  |||||         |||||  | |||||||||||||||||||||| ||||||||    
T  22341349 tagggggcttatgaattgcaaaaaggggtgaagttagggggctggaaagtgattttttttaatagaagaccaaaattgctatggagccaaatataggggg 22341250  T
Q  494 ccaaaagtgcattttagcc 512  Q
     ||||||||||||||||||    
T  22341249 tcaaaagtgcattttagcc 22341231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 272 - 507
Target Start/End: Complemental strand, 53195796 - 53195559
Alignment:
Q  272 aataacacttaaattgagccttttaattttgaccactgatttaatcctaaggctattaattattgctataannnnnnnc--tttaaatttaatttaataa 369  Q
    ||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||| |       |  ||| ||||||||| |||||    
T  53195796 aataacacttatattgagtcttttaatcttgaccactcatttaatcctaaggctattaattattcctatcattcttttcaatttcaatttaattcaataa 53195697  T
Q  370 tagcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaat 469  Q
    |||  |||||||| |||||||| ||||||| | ||| ||||||||||||||||||| |||||||||||| || |||        |||||||| |||||||    
T  53195696 tagtttttgaccgggtcaaaatcagaggggacctataagttgcaaaagggggtgaagttagggggctgaaaattggttttttttaataggggaccaaaat 53195597  T
Q  470 tgctatggagccaaacatagggggccaaaagtgcattt 507  Q
    |||||    | |||| |||  |||||||||||||||||    
T  53195596 tgctaccatggcaaatataaagggccaaaagtgcattt 53195559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 372 - 512
Target Start/End: Original strand, 22341770 - 22341908
Alignment:
Q  372 gcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattg 471  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||         |||||| || ||||||||    
T  22341770 gcctttgaccggatcaaaattag-gggggcttatgagttgcaaaagggggtgaagtta-ggggctgaaaagtgattttttttaataggaggtcaaaattg 22341867  T
Q  472 ctatggagccaaacatagggggccaaaagtgcattttagcc 512  Q
    |||  ||| ||||||||||||  ||||| ||||||||||||    
T  22341868 ctacagagtcaaacataggggaacaaaaatgcattttagcc 22341908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 457 - 514
Target Start/End: Complemental strand, 37283009 - 37282952
Alignment:
Q  457 agggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagccta 514  Q
    |||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||    
T  37283009 agggggccaaaattactacggagccaaacataaggggtcaaaagtgcattttagccta 37282952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 2683198 - 2683255
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    ||||||||||||||||||| || | |||| |||||||||||||||||||||| |||||    
T  2683198 tagggggccaaaattgctacggtggcaaatatagggggccaaaagtgcatttaagcct 2683255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 454 - 509
Target Start/End: Complemental strand, 46693023 - 46692968
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcatttta 509  Q
    |||||||| | |||||| ||| |||||||||| |||||||||||||||||||||||    
T  46693023 aataggggccaaaaattactacggagccaaacttagggggccaaaagtgcatttta 46692968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 834 - 878
Target Start/End: Complemental strand, 32320795 - 32320751
Alignment:
Q  834 agagcatcatagtactgtgtactttatttgatcaagtggttaaaa 878  Q
    ||||||| ||| || ||||||||||||||||||||||||||||||    
T  32320795 agagcattataatattgtgtactttatttgatcaagtggttaaaa 32320751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 263 - 474
Target Start/End: Original strand, 37255905 - 37256117
Alignment:
Q  263 aaggcacacaataacacttaaattgagccttttaattttgaccactgatttaatcctaaggctattaattattgctataannnnnnnc--tttaaattta 360  Q
    |||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||||||||||| ||| |       |  ||||||||||    
T  37255905 aaggaacacaataacacttatattgagttttttaattttgaccactgatttaatcctaatgctattaattattgatatcattcttttccatttaaattta 37256004  T
Q  361 atttaataatagcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaataggg 460  Q
    ||| |||||||||||||||||  |||||||| ||||| ||| ||| |||||||||||||||| |||||| |||||||  ||||||        |||||||    
T  37256005 attcaataatagcctttgacctggtcaaaatcagaggaggcctataagttgcaaaagggggtaaaatta-ggggctggaaagtggttttttttaataggg 37256103  T
Q  461 ggccaaaattgcta 474  Q
    ||||||||||||||    
T  37256104 ggccaaaattgcta 37256117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 372 - 514
Target Start/End: Complemental strand, 37253540 - 37253398
Alignment:
Q  372 gcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattg 471  Q
    ||||||||||| |||||||||||||||||| ||| | ||||||||||||||||| |||||||| ||  |||||         |||| |||||||||||||    
T  37253540 gcctttgaccgggtcaaaattagagggggcctataaattgcaaaagggggtgaagttagggggttggaaagtgatattttttaataaggggccaaaattg 37253441  T
Q  472 ctatggagccaaacatagggggccaaaagtgcattttagccta 514  Q
    |||  |||||||||||||  || ||||| ||||||||||||||    
T  37253440 ctacagagccaaacatagaaggtcaaaaatgcattttagccta 37253398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 21550137 - 21550031
Alignment:
Q  405 tgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgctatggagccaaacatagggggccaaaagtgca 504  Q
    |||||||||||||||||||||||| ||||||||| ||||          || ||||| |||||||||||| || ||||||||||||||||||||||||||    
T  21550137 tgagttgcaaaagggggtgaaattggggggctgaaaagttagtttttttaacaggggcccaaaattgctacggggccaaacatagggggccaaaagtgca 21550038  T
Q  505 ttttagc 511  Q
    |||||||    
T  21550037 ttttagc 21550031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 509
Target Start/End: Original strand, 21550365 - 21550417
Alignment:
Q  457 agggggccaaaattgctatggagccaaacatagggggccaaaagtgcatttta 509  Q
    ||||| |||||||||||| || |||||||||||  ||||||||||||||||||    
T  21550365 aggggaccaaaattgctacggtgccaaacatagacggccaaaagtgcatttta 21550417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 515
Target Start/End: Original strand, 38545504 - 38545563
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    |||||||| |||||||||| || | ||||||||| ||||||||||| ||||| |||||||    
T  38545504 tagggggctaaaattgctacggtggcaaacatagagggccaaaagtacatttaagcctaa 38545563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 464 - 513
Target Start/End: Complemental strand, 38545323 - 38545274
Alignment:
Q  464 caaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    ||||||| |||||| | |||||||| |||||||||||||||||| |||||    
T  38545323 caaaattactatggtggcaaacatatggggccaaaagtgcatttaagcct 38545274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 372 - 512
Target Start/End: Original strand, 29636865 - 29637005
Alignment:
Q  372 gcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattg 471  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  ||||          ||||||||| ||||||||    
T  29636865 gcctttgaccgagtcaaaattagagggggcatgtgagttgcaaaagggggtgaaattagggggctggaaagtatttttttttaatagggggtcaaaattg 29636964  T
Q  472 ctatggagccaaacatagggggccaaaagtgcattttagcc 512  Q
    ||| ||||||||| |||| ||||||||||||||||||||||    
T  29636965 ctacggagccaaatatagagggccaaaagtgcattttagcc 29637005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 303 - 445
Target Start/End: Complemental strand, 41440660 - 41440516
Alignment:
Q  303 accactgatttaatcctaaggctattaattattgctataannnnnnnc--tttaaatttaatttaataatagcctttgaccgagtcaaaattagaggggg 400  Q
    |||||| |||||||||||||||||||||||||| |||| |       |  ||||||||||||| ||||||| ||||||||   |||||||||||||| |     
T  41440660 accactaatttaatcctaaggctattaattattcctatcattcttttccatttaaatttaattcaataataacctttgacttggtcaaaattagaggaga 41440561  T
Q  401 cttatgagttgcaaaagggggtgaaattagggggctgagaagtgg 445  Q
    | ||||||||||||||||||||||| |||||||||||| ||||||    
T  41440560 cctatgagttgcaaaagggggtgaagttagggggctgaaaagtgg 41440516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 263 - 420
Target Start/End: Complemental strand, 39977497 - 39977338
Alignment:
Q  263 aaggcacacaataacacttaaattgagccttttaattttgaccactgatttaatcctaaggctattaattattgctataa--nnnnnnnctttaaattta 360  Q
    |||| ||||||||||||||  |||||  |||||||| |||||| ||||||||||||||||||||||||||||| |||| |          ||||||||||    
T  39977497 aaggaacacaataacacttgtattgaatcttttaatcttgaccgctgatttaatcctaaggctattaattattcctatcattctttttcatttaaattta 39977398  T
Q  361 atttaataatagcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggg 420  Q
    ||| ||||||||||||||  ||  |||||||   ||||||||  ||||||||||||||||    
T  39977397 attcaataatagcctttgttcggatcaaaatagaagggggctactgagttgcaaaagggg 39977338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 41440791 - 41440719
Alignment:
Q  74 gatttttgaaactctaaaacgaaaatgaacaatatttttatcaattgaagtggcaaagaaaccaatcacgaag 146  Q
    |||||| ||||||| |||| ||||  ||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  41440791 gattttcgaaactccaaaaggaaagggaacaatctttttatcaattgaagtggcaaagaaacaaatcatgaag 41440719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 620 - 662
Target Start/End: Original strand, 2359227 - 2359269
Alignment:
Q  620 tcaaaatgaaaactttgaggaaaatagtggaagaatgagaaat 662  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  2359227 tcaaaatgaaagctttgaggaaaatagtagaagaatgagaaat 2359269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 8137592 - 8137539
Alignment:
Q  459 ggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcc 512  Q
    ||||||||||||||||||  | |||||||| |||||||||||||||||| ||||    
T  8137592 ggggccaaaattgctatgacggcaaacataaggggccaaaagtgcatttaagcc 8137539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 19437526 - 19437477
Alignment:
Q  291 cttttaattttgaccactgatttaatcctaaggctattaattattgctat 340  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||| ||||    
T  19437526 cttttaatcttgaccactaatttaatcctaacgctattaattattcctat 19437477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 19573675 - 19573626
Alignment:
Q  291 cttttaattttgaccactgatttaatcctaaggctattaattattgctat 340  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||| ||||    
T  19573675 cttttaatcttgaccactaatttaatcctaacgctattaattattcctat 19573626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 433
Target Start/End: Original strand, 41441259 - 41441320
Alignment:
Q  372 gcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggg 433  Q
    ||||||||||   ||||||||||||||||| ||||||||| |||||||| |||| |||||||    
T  41441259 gcctttgacccgatcaaaattagagggggcctatgagttgtaaaaggggatgaagttagggg 41441320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 8e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 374 - 513
Target Start/End: Original strand, 45231485 - 45231624
Alignment:
Q  374 ctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgct 473  Q
    ||||||||  |||||||| ||||||||| |||| |||||||||||||||||| |||||||| ||  |||||         ||||||||||||||||||||    
T  45231485 ctttgacccggtcaaaatcagagggggcctatgggttgcaaaagggggtgaagttagggggttggaaagtgattgtttttaatagggggccaaaattgct 45231584  T
Q  474 atggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    | |||||| |||||||||||||||||||||||||||||||    
T  45231585 acggagcctaacatagggggccaaaagtgcattttagcct 45231624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 44858483 - 44858420
Alignment:
Q  9 gcatcattaaattcccatggaagattgggattattgtcctcgagagtcaaggtgctgcaacccaa 73  Q
    |||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44858483 gcatcattgaattcccatggaagattgggattattgtcc-ggagagtcaaggtgctgcaacccaa 44858420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 374 - 513
Target Start/End: Complemental strand, 45230180 - 45230040
Alignment:
Q  374 ctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattaggggg-ctgagaagtggnnnnnnnnaatagggggccaaaattgc 472  Q
    ||||||||  |||||||| ||||||||| | |||||||||||||||||||||  ||||||| |||| |||||         |||| || ||||||||| |    
T  45230180 ctttgacccggtcaaaatcagagggggcctctgagttgcaaaagggggtgaaggtaggggggctgaaaagtgattttttttaataaggagccaaaattac 45230081  T
Q  473 tatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    || | |||||||||||||| |||||||||||||||||||||    
T  45230080 tacgaagccaaacatagggagccaaaagtgcattttagcct 45230040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 5326254 - 5326193
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    |||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  5326254 aataggaggccaaaattgctacagagccaaatatagggggccaaaagtgcattttagcctaa 5326193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 538 - 601
Target Start/End: Complemental strand, 6640033 - 6639970
Alignment:
Q  538 agtaaacctcattgcaacaaggagcacaaatcatgcatcttctcttgtaatgcttgcacctatc 601  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| | |||||||| ||||||||    
T  6640033 agtaaacctcattgcaacaaggagcacgaatcctgcatcttctcctataatgcttacacctatc 6639970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 20193222 - 20193280
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcc 512  Q
    ||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||    
T  20193222 aatagggggccaaaattgctacggggccaaacttaggggaccaaaagtgcattttagcc 20193280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 19194130 - 19194073
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    ||||||||||||||||||| | || ||||||||||||||||||||||||||| |||||    
T  19194130 tagggggccaaaattgctacgaagacaaacatagggggccaaaagtgcatttaagcct 19194073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 422
Target Start/End: Original strand, 35606868 - 35607028
Alignment:
Q  263 aaggcacacaataacacttaaattgagccttttaattttgaccactgatttaatcctaaggctattaattattgctataannnnnnnc--tttaaattta 360  Q
    |||| ||| ||||||||||  |||||| |||||||| || |||||||||||||| ||||||||||||||||||  | | |       |  |||||||| |    
T  35606868 aaggaacataataacacttgtattgagtcttttaatcttaaccactgatttaattctaaggctattaattattcttgtcattcttttccatttaaattga 35606967  T
Q  361 atttaataatagcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggt 422  Q
    ||| |||||||| |||||| ||  ||||||| ||||||| | ||||||||||||||||||||    
T  35606968 attaaataatagtctttgatcggatcaaaatcagaggggtc-tatgagttgcaaaagggggt 35607028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 5327168 - 5327292
Alignment:
Q  375 tttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgcta 474  Q
    ||||||||  ||||||| ||||||| | ||||| |||||||||||||| |||||||||||||   |||||         ||||||||||||||||| |||    
T  5327168 tttgaccggatcaaaataagaggggccctatgaattgcaaaagggggtaaaattagggggctagaaagtgactttttttaatagggggccaaaattacta 5327267  T
Q  475 tggagccaaacatagggggccaaaa 499  Q
     ||||||||| ||| ||||||||||    
T  5327268 cggagccaaatataaggggccaaaa 5327292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 20188367 - 20188308
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    ||||||||||||||||||||| || ||||||  |||||||| ||||||||||||||||||    
T  20188367 aatagggggccaaaattgctacggggccaaatttagggggcaaaaagtgcattttagcct 20188308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 35935424 - 35935367
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    ||||||||||||||||||| |  | |||| |||||||||||||||||||||| |||||    
T  35935424 tagggggccaaaattgctacgacggcaaatatagggggccaaaagtgcatttaagcct 35935367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 35844796 - 35844739
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    ||||||||||||||||||| |  | ||||||||||||||||||| | ||||| |||||    
T  35844796 tagggggccaaaattgctacgatggcaaacatagggggccaaaacttcatttaagcct 35844739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 7e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 375 - 515
Target Start/End: Complemental strand, 655663 - 655523
Alignment:
Q  375 tttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgcta 474  Q
    |||||||  |||||||| ||||||||  ||||||||||||||||||||||| ||||||||||   |||||         |||||||||||||||||||||    
T  655663 tttgaccctgtcaaaatcagagggggtctatgagttgcaaaagggggtgaagttagggggctagaaagtgattttttttaatagggggccaaaattgcta 655564  T
Q  475 tggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
        | ||||||||||||||||||||||||||| |||||||    
T  655563 ccatggcaaacatagggggccaaaagtgcatttaagcctaa 655523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 9362798 - 9362741
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    |||||| |||||||||||| || | ||||||||| ||||||||||||||||| |||||    
T  9362798 taggggaccaaaattgctacggcggcaaacatagtgggccaaaagtgcatttaagcct 9362741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 13118569 - 13118625
Alignment:
Q  459 ggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    |||||||||||||||| || | |||||||| ||||||| |||||||||| |||||||    
T  13118569 ggggccaaaattgctacggtgacaaacataaggggccataagtgcatttaagcctaa 13118625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 403 - 509
Target Start/End: Original strand, 708 - 814
Alignment:
Q  403 tatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnnnnnaatagggggccaaaattgctatggagccaaacatagggggccaaaagtg 502  Q
    |||||||||||||||||||| ||||| ||||||||| |||||         |||||||| | |||||||||||||||||||||||||| || |||| |||    
T  708 tatgagttgcaaaagggggtaaaattggggggctgaaaagtgtttttttttaataggggacaaaaattgctatggagccaaacataggaggtcaaatgtg 807  T
Q  503 catttta 509  Q
    |||||||    
T  808 catttta 814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 25060 - 24999
Alignment:
Q  454 aatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcctaa 515  Q
    |||||| |||||||||||||| |  | |||||||||||||||||||||||||||||||||||    
T  25060 aataggaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcattttagcctaa 24999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 513
Target Start/End: Original strand, 20104 - 20266
Alignment:
Q  351 tttaaatttaatttaataatagcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnn 450  Q
    ||||||||||||| ||||||| ||||||| || |||||||| | || | |||||||||||  |||||||||| ||| ||| ||||||| |||||          
T  20104 tttaaatttaattcaataataacctttgatcgggtcaaaatcaaagagagcttatgagttataaaagggggtaaaactagagggctgaaaagtgattttt 20203  T
Q  451 nnnaatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
       | |||||||||||||||||||    |  ||||||||||| ||||||||| |||| |||||    
T  20204 tttagtagggggccaaaattgctaccatggaaaacataggggaccaaaagtggatttaagcct 20266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 513
Target Start/End: Original strand, 27996 - 28158
Alignment:
Q  351 tttaaatttaatttaataatagcctttgaccgagtcaaaattagagggggcttatgagttgcaaaagggggtgaaattagggggctgagaagtggnnnnn 450  Q
    ||||||||||||| ||||||| ||||||| || |||||||| | || | |||||||||||  |||||||||| ||| ||| ||||||| |||||          
T  27996 tttaaatttaattcaataataacctttgatcgggtcaaaatcaaagagagcttatgagttataaaagggggtaaaactagagggctgaaaagtgattttt 28095  T
Q  451 nnnaatagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
       | |||||||||||||||||||    |  ||||||||||| ||||||||| |||| |||||    
T  28096 tttagtagggggccaaaattgctaccatggaaaacataggggaccaaaagtggatttaagcct 28158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 128407 - 128350
Alignment:
Q  456 tagggggccaaaattgctatggagccaaacatagggggccaaaagtgcattttagcct 513  Q
    |||||||||||||||| || |  | ||||||||||||||||||||||||||| |||||    
T  128407 tagggggccaaaattgatacgacggcaaacatagggggccaaaagtgcatttaagcct 128350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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