View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4485-Insertion-2 (Length: 870)
Name: NF4485-Insertion-2
Description: NF4485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4485-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 825
Target Start/End: Original strand, 53929694 - 53930528
Alignment:
| Q |
8 |
gcatgaagcaaacataattttttattgtctcaagcactatgtatcttagatggatttcaaattgtttt------------------gttttgaagataga |
89 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || |
|
|
| T |
53929694 |
gcatgaagcaaacatagatttgtattgtctcaagcactatgtatcttaaatggatttcaaattgttttgtttactctattgattttgttttgaagatgga |
53929793 |
T |
|
| Q |
90 |
ctcccttgatggttgattgctcatggcatagaagttggcttgaggacaccttaaaaacacctccaacccaaaatttacaagttcttccttcgccatatat |
189 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
53929794 |
ctcccttgatggttgctcgttcatggcatagaagttggcttgaggacaccttaaaagaacctccagccgaaaatttacaagttcttccttcgccatatat |
53929893 |
T |
|
| Q |
190 |
atctcttccacttatgagcattgtcaaaattgctaggtatgtctctttcagagccttcctctcaaaattcaaccaatttcttcctaacaatcaataacct |
289 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53929894 |
atctcttccacttatgagcattgtaaaaattgctaggtatgtgtctttcagagccatcctctcaaaattcaaccaatttcttcataacaatcaataacct |
53929993 |
T |
|
| Q |
290 |
ttcaagattgatattggttgacaacagctttggtctttatgggaaaacccatgtgaaaaattgttttcatagaaattagcatcatttgattttaataatg |
389 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || | |
|
|
| T |
53929994 |
ttcaagattgatattggttgacagcagctttggtctttatgggaaaa-ccatgtgaaaaattgttttaatagaaattagcatcatttgattttaacaagg |
53930092 |
T |
|
| Q |
390 |
acatttatttccatgaatttattgactctgctctgatttctagtcaactagcagccagcaggtggatttaactgattatactttgaatgcggtgacaagc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53930093 |
acatttatttccatgaatttattgactctgctctgatttcaagtcaactagcagccagcaggtggatttaactgattatactttgaatgcggtgacaagc |
53930192 |
T |
|
| Q |
490 |
atgattatcaaagagttccaaataaaattctatgataccaggaaaaacttattcaaatttatgtttgtg-ggttgtttgtgatgtgagtatgtgcatatt |
588 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||| || || |||||||||| |||||| |||||||||||| |
|
|
| T |
53930193 |
atgattatcaaagagttccgaataaaattctatgataccacgaaaaatttactcaaatttatgcttatgtggttgtttgtcatgtgattatgtgcatatt |
53930292 |
T |
|
| Q |
589 |
tgtttgagttcgagattttgaaagtagtttttgccaatactatggtgtggagagatccatagctcaaaagcaaacaaactatttgttgctaactagagga |
688 |
Q |
| |
|
|| ||||||| ||||| || || ||| ||||||||||||| |||| ||||||||||| |||| |||| ||||||||| |||||||||||||||||| || |
|
|
| T |
53930293 |
tggttgagttagagatcttcaatataggttttgccaatactttggtttggagagatccctagcgcaaaggcaaacaaattatttgttgctaactagatga |
53930392 |
T |
|
| Q |
689 |
gtttagtatttttaaggttcattaattacatattcaatttcagagtgtcaagcttcattgaaagtgctttgatatttttatttcatttatagtttaaacc |
788 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
53930393 |
gtttagtcattttaaggttcattaattacatatttaatttctgtgtcatcagcttcattgaaagtgctttgatcttttcatttcatttatagttt-aacc |
53930491 |
T |
|
| Q |
789 |
aaattaggttatatttgttcaaataaacctatcagat |
825 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| |||| |
|
|
| T |
53930492 |
aaataaggttatatttgttcaaatcaatctattagat |
53930528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 342 - 695
Target Start/End: Original strand, 54299673 - 54300027
Alignment:
| Q |
342 |
gtgaaaaattgttttcatagaaattagcatcatttgattttaataatgacatttatttccatgaatttattgactctgctctgatttctagtcaactagc |
441 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |||||||| ||||| | |||||||| |||||||| |||||| |
|
|
| T |
54299673 |
gtgaaaatttgttttcaaagaaattagcatgatttgattttagtaatgacattcatttccataaatttgtcgactctgccctgatttcaagtcaa----- |
54299767 |
T |
|
| Q |
442 |
agccagcaggtggatttaactgattatactttgaatgcggtgacaagcatgattatcaaagagttccaaataaaattctatgataccaggaaaaacttat |
541 |
Q |
| |
|
| || ||||||||||| |||| ||| |||||||| |||||||||| |||||||| || |||||| |||||||| | ||||| ||||||| ||| |
|
|
| T |
54299768 |
--caagatggtggatttaattgataatagtttgaatgtggtgacaagcttgattatctaacagttcctcataaaattgaaagatactaggaaaattttac |
54299865 |
T |
|
| Q |
542 |
tcaaatttatg-tttgtgggttgtttgtgatgtga--------gtatgtgcatatttgtttgagttcgagattttgaaagtagtttttgccaatactatg |
632 |
Q |
| |
|
||||||||||| || | |||||| ||| ||||| |||| ||| ||| | ||||||| ||||| || ||| || |||||| |||||| || |
|
|
| T |
54299866 |
tcaaatttatgcttaattggttgtgtgtcgtgtgattatttgtgtatttgcctatacggttgagttagagatcttcaaaatactttttg-caatacagtg |
54299964 |
T |
|
| Q |
633 |
gtgtggagagatccatagctcaaaagcaaacaaactatttgttgctaactagaggagtttagt |
695 |
Q |
| |
|
|| |||||| | || |||| |||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
54299965 |
gtttggagatacccctagcgcaaaagcaaacaaactatttgttgctaaatagttgagtttagt |
54300027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 613 - 728
Target Start/End: Original strand, 54287259 - 54287373
Alignment:
| Q |
613 |
tagtttttgccaatactatggtgtggagagatccatagctcaaaagcaaacaaactatttgttgctaactagaggagtttagtatttttaaggttcatta |
712 |
Q |
| |
|
|||||||||| ||||| ||| | ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
54287259 |
tagtttttgc-aatacaatgatatggagagatccccaactcaaaagcaaacaaactatttgttgctaactagttgagtttagtctttttatcgttcatta |
54287357 |
T |
|
| Q |
713 |
attacatattcaattt |
728 |
Q |
| |
|
||| ||| || ||||| |
|
|
| T |
54287358 |
attgcatgtttaattt |
54287373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 653 - 732
Target Start/End: Original strand, 54306074 - 54306153
Alignment:
| Q |
653 |
caaaagcaaacaaactatttgttgctaactagaggagtttagtatttttaaggttcattaattacatattcaatttcaga |
732 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| ||| || ||||||||| |
|
|
| T |
54306074 |
caaaagtaaacaaactatttgttgctaactagttgagtttagtctttttaaggttcgttaattgcatgtttaatttcaga |
54306153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 450 - 520
Target Start/End: Original strand, 54287106 - 54287176
Alignment:
| Q |
450 |
ggtggatttaactgattatactttgaatgcggtgacaagcatgattatcaaagagttccaaataaaattct |
520 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||| |||| |||||||||||| ||| ||||||||||| |
|
|
| T |
54287106 |
ggtggatttaagtgataatacttttaatgcggtgacacgcataattatcaaagagctcctaataaaattct |
54287176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 278 - 867
Target Start/End: Complemental strand, 7205106 - 7204519
Alignment:
| Q |
278 |
aatcaataacctttcaagattgatattggttgacaacagctttggtctttatgggaaaacccatgtgaaaaattgttttcatagaaattagcatcatttg |
377 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7205106 |
aatcaataaccttt-aattttgatattggttgacagcagctttggtctttatgggaaaaaccatgtgaaaaattgttttcatagaaattaacatcatttg |
7205008 |
T |
|
| Q |
378 |
attttaataatgacatttatttccatgaatttattgactctgctctgatttctagtcaactagcagccagcaggtggatttaactgattatactttgaat |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7205007 |
attttaataatgacatttatttccatgaatttattgactctgctctgatttctagtcaactagcagccagcaggtggatttaactgattatactttgaat |
7204908 |
T |
|
| Q |
478 |
gcggtgacaagcatgattatcaaagagttccaaataaaattctatgataccaggaaaaacttattcaaatttatgtttgtgggttgtttgtgatgtgagt |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| || ||||||||||||| |||||||||| |||||| | |
|
|
| T |
7204907 |
gcggtgacaagcatgattatcaaagagttccaaataaaattctacgatgccaggaaaaatttactctaatttatgtttgtaggttgtttgtcatgtgatt |
7204808 |
T |
|
| Q |
578 |
atgtgcatatttgtttgagttcgagattttgaaagtagtttttgccaatactatggtgtggagagatccatagctcaaaagcaaacaaactatttgttgc |
677 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7204807 |
atgtgcatatttgtttgagttagagattttgaaaatggtttttgccaatactatggtgtggagagatccctagctcaaaagcaaacaaactatttgttgc |
7204708 |
T |
|
| Q |
678 |
taactagaggagtttagtatttttaaggttcattaattacatattcaatttcagagtgtcaagcttcattgaaagtgctttgatatttttatttcattta |
777 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
7204707 |
taactagaggagtttaatctttttaaggttcattaattacatatttaatttcagagtgtcaagcttcattgaaagtgcttcgatattttcatttcattta |
7204608 |
T |
|
| Q |
778 |
tagtttaaaccaaattaggttatatttgttcaaataaacctatcaga-tatcaagttttt-agtg-atgaaagcggacacacttctaatattt |
867 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| ||| |||||||||||| |||| |||||||| ||||||||| |||||||| |
|
|
| T |
7204607 |
tagttta----aaattaggttatatttgttcaaatcaacctattagattatcaagtttttaagtgaatgaaagcagacacacttataatattt |
7204519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 7205237 - 7205168
Alignment:
| Q |
8 |
gcatgaagcaaacataattttttattgtctcaagcactatgtatcttagatggatttcaaattgttttgt |
77 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
7205237 |
gcatgaagcaaacaaagttttttattgtctcaagcactatgtatcttagaaggatttccaattgttttgt |
7205168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University