View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4485-Insertion-3 (Length: 296)
Name: NF4485-Insertion-3
Description: NF4485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4485-Insertion-3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 39299562 - 39299674
Alignment:
| Q |
184 |
cccacattgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctcggccacaacttgtcctgt |
283 |
Q |
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| T |
39299562 |
cccacatcgaacctacatttccagcaccaggtacttttccttcacctcttgttcctaaatcctctgtttttcttcctttctctgccacaacttgtcctgt |
39299661 |
T |
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| Q |
284 |
tcccattcctctg |
296 |
Q |
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| T |
39299662 |
tcccattcctctg |
39299674 |
T |
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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 39299385 - 39299471
Alignment:
| Q |
7 |
acattgcaccttcatttccagcacccgctcttcctctttgctcagctacactctttcccaagattacaccttcattttcaccaccaa |
93 |
Q |
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| T |
39299385 |
acattgcaccttcatttccagcacccgctcttcctctttgctcagcaacactctttcccaagattacaccttcattttcaccaccaa |
39299471 |
T |
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