View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4485_low_1 (Length: 501)
Name: NF4485_low_1
Description: NF4485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4485_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 211 - 471
Target Start/End: Complemental strand, 28536317 - 28536057
Alignment:
| Q |
211 |
tatcctcgtgttaaattacaattgagagaatgcattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536317 |
tatcctcgtgttaaattacaattgagagaatccattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
28536218 |
T |
|
| Q |
311 |
tgttcggttagtagtctagcatgtatttgcaaggtagctgcctggtctagtacagatgttcaatatatactctctgttaagtcctagacattgtttggat |
410 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536217 |
tgttcggttagtagtctaacatgtatttgcaaggtagctgcctggtctagtacagctgttcaatatatactctctgttaagtcctagacattgtttggat |
28536118 |
T |
|
| Q |
411 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536117 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
28536057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28536590 - 28536380
Alignment:
| Q |
1 |
catctacaaactttgtgtgtcgttcttccttcttgctttcttcgcacgctcaacctcagccgtttcatctatcaaccacacattatcatactctcgagtc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536590 |
catctacaaactttttgtgtcgttcttccttcttgcgttcttcgcacgctcaacgtcagccgtttcatctatcaaccacacattatcatactctcgagtc |
28536491 |
T |
|
| Q |
101 |
tggtttttggttttgaaatttcagagcattactttatactgatgaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536490 |
tggtttttggttttgaaatttcagagcattactttatactgatgaaatgaattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcac |
28536391 |
T |
|
| Q |
201 |
cattcatgaat |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
28536390 |
cattcatgaat |
28536380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 54492156 - 54492190
Alignment:
| Q |
156 |
ctcatgtgtaatttacacatgagaaggtaaagtgt |
190 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
54492156 |
ctcatgtgtaattttcacatgagaaggtaaagtgt |
54492190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 17429155 - 17429217
Alignment:
| Q |
144 |
gaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
206 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |||||||| |||| | |||||||| |
|
|
| T |
17429155 |
gaaatggattctctcatgtgtaatttactcatgagatactaaagtgtgatctcttaccattca |
17429217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 42971534 - 42971584
Alignment:
| Q |
156 |
ctcatgtgtaatttacacatgaga-aggtaaagtgtcatctttcaccattc |
205 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
42971534 |
ctcatgtgtaatttttacatgagagaggtaaagtgtcatctctcaccattc |
42971584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 49655326 - 49655370
Alignment:
| Q |
162 |
tgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
206 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
49655326 |
tgtaatttacacataagagagtaaagtgtcatctctcaccattca |
49655370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University