View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4485_low_3 (Length: 251)

Name: NF4485_low_3
Description: NF4485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4485_low_3
NF4485_low_3
[»] chr7 (2 HSPs)
chr7 (1-91)||(28462703-28462793)
chr7 (179-216)||(25950829-25950866)
[»] chr2 (2 HSPs)
chr2 (172-216)||(4408780-4408824)
chr2 (184-215)||(30830345-30830376)
[»] scaffold0883 (1 HSPs)
scaffold0883 (181-215)||(1720-1754)
[»] scaffold0095 (1 HSPs)
scaffold0095 (181-215)||(45513-45547)
[»] chr8 (2 HSPs)
chr8 (181-215)||(39406559-39406593)
chr8 (112-169)||(20035129-20035186)
[»] chr4 (2 HSPs)
chr4 (178-216)||(24073128-24073166)
chr4 (180-216)||(52850456-52850492)
[»] scaffold0206 (1 HSPs)
scaffold0206 (112-169)||(7059-7116)
[»] chr1 (1 HSPs)
chr1 (177-213)||(32153799-32153835)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28462793 - 28462703
Alignment:
Q  1 ataagatctacgtattttgtttctaaattcatattggacttgatcttaacatggaatttttgttttatgaattgatgattaactactttgc 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28462793 ataagatctacgtattttgtttctaaattcatattggacttgatcttaacatggaatttttgttttatcaattgatgattaactactttgc 28462703  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 25950829 - 25950866
Alignment:
Q  179 aatattacctccgttcttaattataagacctttttgag 216  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  25950829 aatactacctccgtccttaattataagacctttttgag 25950866  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 4408824 - 4408780
Alignment:
Q  172 aatgcataatattacctccgttcttaattataagacctttttgag 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  4408824 aatgcataatactacctccgttcttaattataagacctttttgag 4408780  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 30830376 - 30830345
Alignment:
Q  184 tacctccgttcttaattataagacctttttga 215  Q
    ||||||||||||||||||||||||||||||||    
T  30830376 tacctccgttcttaattataagacctttttga 30830345  T

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Target: scaffold0883 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0883
Description:

Target: scaffold0883; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 1720 - 1754
Alignment:
Q  181 tattacctccgttcttaattataagacctttttga 215  Q
    |||||||||||| ||||||||||||||||||||||    
T  1720 tattacctccgtccttaattataagacctttttga 1754  T

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Target: scaffold0095 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 45513 - 45547
Alignment:
Q  181 tattacctccgttcttaattataagacctttttga 215  Q
    |||||||||||| ||||||||||||||||||||||    
T  45513 tattacctccgtccttaattataagacctttttga 45547  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 39406559 - 39406593
Alignment:
Q  181 tattacctccgttcttaattataagacctttttga 215  Q
    |||||||||||| ||||||||||||||||||||||    
T  39406559 tattacctccgtccttaattataagacctttttga 39406593  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 20035129 - 20035186
Alignment:
Q  112 gagacaaatatagagatgctaacatcaatgacatatccatatacatttgcgtataaat 169  Q
    |||||||| |||||||| | ||||||||||||||||| |||||| |||| | ||||||    
T  20035129 gagacaaaaatagagatccaaacatcaatgacatatcaatatacgtttgtgcataaat 20035186  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 24073166 - 24073128
Alignment:
Q  178 taatattacctccgttcttaattataagacctttttgag 216  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  24073166 taatactacctccgtccttaattataagacctttttgag 24073128  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 52850492 - 52850456
Alignment:
Q  180 atattacctccgttcttaattataagacctttttgag 216  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  52850492 atattacctccgtccttaattataagatctttttgag 52850456  T

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Target: scaffold0206 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 7059 - 7116
Alignment:
Q  112 gagacaaatatagagatgctaacatcaatgacatatccatatacatttgcgtataaat 169  Q
    |||||||| |||||||| | ||||||||||||||||| |||||| |||| | ||||||    
T  7059 gagacaaaaatagagatccaaacatcaatgacatatcaatatacgtttgtgcataaat 7116  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 32153835 - 32153799
Alignment:
Q  177 ataatattacctccgttcttaattataagaccttttt 213  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  32153835 ataatactacctccgtccttaattataagaccttttt 32153799  T

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