View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4486-Insertion-1 (Length: 717)

Name: NF4486-Insertion-1
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4486-Insertion-1
NF4486-Insertion-1
[»] chr1 (3 HSPs)
chr1 (166-516)||(26217246-26217609)
chr1 (513-717)||(26216983-26217187)
chr1 (7-110)||(26217609-26217712)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 166 - 516
Target Start/End: Complemental strand, 26217609 - 26217246
Alignment:
Q  166 aatccagcctatcataggatttactaatataaagtctatgagctacattaccttgattaactttcacct-------------atgaacaatttcaatggt 252  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||    
T  26217609 aatccaacctatcataggatttactaatataaagtctatgagctacattaccttgattaactttcaccttaggtttcacacgatgaacaatttcaatggt 26217510  T
Q  253 tgtcattgcattatcgagaatagagtaacttgacacaaaagctgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26217509 tgtcattgcattatcgagaatagagtaacttgacacaaaagctgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactt 26217410  T
Q  353 taaccacaactttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagcttgtaattaggctagg 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26217409 taaccacaactttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagtttgtaattaggctagg 26217310  T
Q  453 aggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatcatgaccacaatttttc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26217309 aggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatgatgaccacaatttttc 26217246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 513 - 717
Target Start/End: Complemental strand, 26217187 - 26216983
Alignment:
Q  513 tttcatagagaagatggtttccttgaattcttcaaataggaaagcagcaaatagaaactcattatccatactagtgaatagtgatagatggattaatggc 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  26217187 tttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggattaatggt 26217088  T
Q  613 attaagaatcgcctcactggagctattctgcttttaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccacgttctacatattgtg 712  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26217087 attaagaatcgcctcactggtgctattctgcttctaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccgcgttctacatattgtg 26216988  T
Q  713 ccatc 717  Q
    |||||    
T  26216987 ccatc 26216983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 26217712 - 26217609
Alignment:
Q  7 aagggtccccttgttgaagacctcttgcaagtatgatagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataat 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26217712 aagggtccccttgttgaagacctcttgcaagtatgacagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataat 26217613  T
Q  107 cgaa 110  Q
    ||||    
T  26217612 cgaa 26217609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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