View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486-Insertion-2 (Length: 704)
Name: NF4486-Insertion-2
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 306 - 704
Target Start/End: Complemental strand, 45242503 - 45242103
Alignment:
| Q |
306 |
atttgactatgttacatgaagtgtacttttggtttgttttactgttgaaatctcttaacaacacacctagtttctgtacatattgtacgtcactacgccc |
405 |
Q |
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| T |
45242503 |
atttgactatgttacatgaagtgtatttttggtttgttttattgttgaaatctcttaacaacacacctagtttctgtacatattgtacgtcactacgccc |
45242404 |
T |
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| Q |
406 |
tatctacattctccttatcgctgaaaacccatttgctgtctgtgggttttctaaaaggaatgaatgactaagtattattttcaaattctgcttgcatggc |
505 |
Q |
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| T |
45242403 |
catctacattctccttatccctgaaaacccatttgttgtctgtgggttttctaaaaggaatgaatgactaagtattattttcaaattctgcttgcatggc |
45242304 |
T |
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| Q |
506 |
ttgaaagttgaaaccactcaggactctgcaactgctatttcataaattttggttcaacctgtgttagttgtacggtagtgttgtttgggtttaatatatc |
605 |
Q |
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| T |
45242303 |
ttgaaagttgaaaccactcaggactctgcaactgctatttcataaattttggttcaacctgtgttagttgtacggtagtgttgtttgggtttaatatatc |
45242204 |
T |
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| Q |
606 |
aaatttaaatatggtatg--tataggatgaatatatggtgatttcgacacaccttgtttgtgtcacgtgacacggttaagtcatgcttgatcaattatct |
703 |
Q |
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| T |
45242203 |
aaatttaaatatggtatgtatataggatgaatatatggtgatttcgacacaccttgtttgtgtcacgtgacacggttaagtcatgcttgatcaattatct |
45242104 |
T |
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| Q |
704 |
g |
704 |
Q |
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| T |
45242103 |
g |
45242103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 45242837 - 45242541
Alignment:
| Q |
8 |
aaattcctccagattaatgtacagttcctgtttaaaatgggttgctgctgctgtt---tatatctatattcttatgtgatattgttgaggttactagcat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242837 |
aaattcctccagattaatgtacagttcctgtttaaaatgggttgctgctgttgttgtttatatctatattcttatgtgatattgttgaggttactagcat |
45242738 |
T |
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| Q |
105 |
gagaatcatattttattttactaggatgacttcttattccagggatttaaattgacattgaaagagagccaaggaggaaccactgattggtagtcgaaac |
204 |
Q |
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| T |
45242737 |
gagattcatattttattttactaggatgacttcttgttccagggatttaaattgacattgaaagagagccaaggaagaaccagtgattggtagtcgaaac |
45242638 |
T |
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| Q |
205 |
cagatgctcaaagaaaaacggcctatatgtcatttaggtatggtgtaaagaagtgttcaaaacaattattatctaggattttgtatgtatgtgtatc |
301 |
Q |
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| T |
45242637 |
cagatgctcaaagaaaaacgacctatatgtcatttaggtatggtgtaaagaagtgttgaaaacaattattatctaggattttgtatgtatgtgtatc |
45242541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 597
Target Start/End: Original strand, 11425447 - 11425493
Alignment:
| Q |
551 |
attttggttcaacctgtgttagttgtacggtagtgttgtttgggttt |
597 |
Q |
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| T |
11425447 |
attttggttcaacacgtgttagtcgtatggtagtgttgtttgggttt |
11425493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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