View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_high_12 (Length: 283)
Name: NF4486_high_12
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 19688479 - 19688744
Alignment:
| Q |
7 |
gaagttattttgggacgaaaggagtatgatcaatatttttgataaatgaaatattaaatat-------gtgttttcttctcaatttgttatgcaaggagg |
99 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
19688479 |
gaagttattttgagacgaaaggagtatgatctatatttttgataaatgaaatattaaatcttgcttttgtgttttcttctcaatttgttatgcaaggagg |
19688578 |
T |
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| Q |
100 |
aaccttattacttgatatttctaacattataaatctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19688579 |
aaccttattacttgatatttctaacattataaatctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatc |
19688678 |
T |
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| Q |
200 |
attgttcatacctttttctcattttcctccaaagaaaatgcgaaaaggttgcttctaccactatac |
265 |
Q |
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| T |
19688679 |
attgttcatacctttttctcattttcctccaaagaaaatgcgaaaaggttgcttctaccactatac |
19688744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 19626854 - 19626722
Alignment:
| Q |
133 |
tctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaa |
232 |
Q |
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| T |
19626854 |
tctaacagacatggttagttggagaggactgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaa |
19626755 |
T |
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| Q |
233 |
gaaaatgcgaaaaggttgcttctaccactatac |
265 |
Q |
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| T |
19626754 |
gaaaatgcaaaaaggttgcctgtaccactatac |
19626722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 35360331 - 35360463
Alignment:
| Q |
133 |
tctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaa |
232 |
Q |
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||||| |||||||||||||||| ||||| ||||||||| ||||||||||| ||||| | ||||||||||||||||||| |||||||||||||||||||| |
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| T |
35360331 |
tctaatagatatggttagttggggatgaatgggatgaatatgagcaaatggaagcaccgaaaggatcattgttcataccattttctcattttcctccaaa |
35360430 |
T |
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| Q |
233 |
gaaaatgcgaaaaggttgcttctaccactatac |
265 |
Q |
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| T |
35360431 |
gaaaatgcgaaaagattgcttctaccactatac |
35360463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 138 - 265
Target Start/End: Original strand, 35372705 - 35372832
Alignment:
| Q |
138 |
cagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaagaaaa |
237 |
Q |
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| T |
35372705 |
cagatatggctagttggagatgaatgggatgaatatgagcaaatggaagcaccgaaaggatcattattcataccattttctcatttccctccaaagaaaa |
35372804 |
T |
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| Q |
238 |
tgcgaaaaggttgcttctaccactatac |
265 |
Q |
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| T |
35372805 |
tgcgaaaagattgcttctaccactatac |
35372832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 134 - 261
Target Start/End: Original strand, 35382704 - 35382831
Alignment:
| Q |
134 |
ctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaag |
233 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||| || ||||| ||||||| ||||| |||||||| ||||||||||| ||||||||| |
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| T |
35382704 |
ctaacagatatggttagttggggatgaatgggatgaagatgagcaattgaaagcaccagaagggtcattattcataccattttctcatttccctccaaag |
35382803 |
T |
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| Q |
234 |
aaaatgcgaaaaggttgcttctaccact |
261 |
Q |
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| T |
35382804 |
aaaatgagaaaatgttgcttctaccact |
35382831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 2253573 - 2253510
Alignment:
| Q |
193 |
aaggatcattgttcatacctttttctcattttcctccaaagaaaatgcgaaaaggttgcttcta |
256 |
Q |
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|||||||||||||| |||| ||||| || || |||||||||||| | ||||||| ||||||||| |
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| T |
2253573 |
aaggatcattgttcgtaccattttcccaattccctccaaagaaatttcgaaaagattgcttcta |
2253510 |
T |
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