View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_high_24 (Length: 238)
Name: NF4486_high_24
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 6471836 - 6472065
Alignment:
| Q |
1 |
tgtaccctaaaacttgcctaagattgagtagtatccaatgctgaaaatactaagaatctaacacacaaattgcactcaccacataccttaaaaaactata |
100 |
Q |
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| T |
6471836 |
tgtaccctaaaacttgcctaagattgagtagtatctaatgctgaaaatactaagaatctaacacaaaaattgcactcaccacataccttaaaaaactata |
6471935 |
T |
|
| Q |
101 |
aaaccacaataataattaagacattcatcattatcctatcagctgcaatgcctaacaacaaagagaatagttcctttctattcccacagatacaatccac |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6471936 |
aaaccacaatcataattaagacattcatcattatcctatcagctgcaatgcctaacaacaaagagaatagttcctttctattcccacagatacaatccac |
6472035 |
T |
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| Q |
201 |
tgttcttcctgacccctccaaattcttctc |
230 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
6472036 |
tgttctccctgacccctccaaattcttctc |
6472065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 6529386 - 6529350
Alignment:
| Q |
196 |
tccactgttcttcctgacccctccaaattcttctctc |
232 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
6529386 |
tccactgtccttcctgacccctccaaattcttctctc |
6529350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 6506673 - 6506637
Alignment:
| Q |
196 |
tccactgttcttcctgacccctccaaattcttctctc |
232 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
6506673 |
tccactgtcctccctgacccctccaaattcttctctc |
6506637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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