View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4486_low_1 (Length: 825)
Name: NF4486_low_1
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 785; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 11 - 811
Target Start/End: Original strand, 33904415 - 33905215
Alignment:
| Q |
11 |
cataggcattaaatttcatttatgtgcattttggtttgaagaagcaacactaattaattactaagatccagcacagacagatttgttaggtaaaatgttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33904415 |
cataggcattaaatttcatttatgtgcattttggtttgaagaagcaacactaattaattactaagatccagcacagacagatttgttaggtaaaatgttg |
33904514 |
T |
|
| Q |
111 |
gtttagccgtcctagtcgcataatcgagcacatctatttgatgtagcaagcatagctaagaagttaaacctgtgattttactaacatcactaaagaaaat |
210 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33904515 |
gtttaaccgtcctagtcgcataattgagcacatctatttgatttagcaagcatagctaagaagttaaacctgtgattttactaacatcactaaagaaaat |
33904614 |
T |
|
| Q |
211 |
aaaatagttttgtctagtaaattaactaccttcaacctctatatgtagcattcaattctatattactatgtaaacaaaaaatactattaactggattatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33904615 |
aaaatagttttgtctagtaaattaactaccttcaacctctatatgtagcattcaattctatattactatgtaaacaaaaaatactattaactggattatt |
33904714 |
T |
|
| Q |
311 |
ttctgaattgttgttactcttctgatcctcactttaagagaaattctgttctcccatgcttccttgggtacgttacatatacatacaagggctaaagtgt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33904715 |
ttctgaattgttgttactcttctgatcctcactttaagagaaattctgttctcccatgcttccttgggttcgttacatatacatacaagggctaaagtgt |
33904814 |
T |
|
| Q |
411 |
tcttaattttacttgaaattttgcatgtaacatgttttttaacttaaaaaatcattaattgtgctcaaagtgggtttttctcatgcacagggtggttatg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33904815 |
tcttaattttacttgaaattttgcatgtaacatgttttttaacttaaaaaatcattaattgtgctcaaagtgggtttttctcatgcacagggtggttatg |
33904914 |
T |
|
| Q |
511 |
ctaggcaagaactattttatcttctgaaagaagaaaaagatgtacatttttcatttggaagtgtacagaaaggtggagtgaggaatgcaacaaacggcat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33904915 |
ctaggcaagaactattttatcttctgaaagaagaaaaagatgtacatttttcatttggaagtgtacagaaaggtggagtgaggaatgcaacaaacggcat |
33905014 |
T |
|
| Q |
611 |
gcgatcttcgaaattctgtctcaacatagctggcgacacgccatcatcaaatcgcttattcgatgcaattgcaagtcactgtgttcctgtcataatcagt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33905015 |
gcgatcttcgaaattctgtctcaacatagctggcgacacgccatcatcaaatcgcttattcgatgcaattgcaagtcactgtgttcctgtcataatcagt |
33905114 |
T |
|
| Q |
711 |
gatgaaattgagcttccatatgaggatgttctcgactactccaagttctgcgtatttgttcgcacaagggatgctgttaaaaagaagtatctgataaact |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33905115 |
gatgaaattgagcttccatatgaggatgttctcgactactccaagttctgcgtatttgttcgcacaagggatgctgttaaaaagaagtatctgataaact |
33905214 |
T |
|
| Q |
811 |
t |
811 |
Q |
| |
|
| |
|
|
| T |
33905215 |
t |
33905215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 498 - 772
Target Start/End: Complemental strand, 9326697 - 9326423
Alignment:
| Q |
498 |
cagggtggttatgctaggcaagaactattttatcttctgaaagaagaaaaagatgtacatttttcatttggaagtgtacagaaaggtggagtgaggaatg |
597 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||| | ||||| | ||||| ||||||||||||||||||||||| | || |||| |||| | | ||| | |
|
|
| T |
9326697 |
cagggaggttatgtgaggcaagaactatattattctttgaaaaatgaaaaggatgtacatttttcatttggaagcattcaaaaagatggaatcaagaaag |
9326598 |
T |
|
| Q |
598 |
caacaaacggcatgcgatcttcgaaattctgtctcaacatagctggcgacacgccatcatcaaatcgcttattcgatgcaattgcaagtcactgtgttcc |
697 |
Q |
| |
|
||||| | || ||||| | |||||||| || || |||||||| |||||||| || |||||||| ||||| ||||| |||||||| ||||| ||||| || |
|
|
| T |
9326597 |
caacagaaggaatgcgtttgtcgaaattttgcctaaacatagcaggcgacacaccttcatcaaaccgcttgttcgacgcaattgctagtcattgtgtccc |
9326498 |
T |
|
| Q |
698 |
tgtcataatcagtgatgaaattgagcttccatatgaggatgttctcgactactccaagttctgcgtatttgttcg |
772 |
Q |
| |
|
||| || |||||||||||||||||||| || | |||||| | |||||||||||| |||||||| |||||||||| |
|
|
| T |
9326497 |
tgtgatcatcagtgatgaaattgagctaccgttcgaggatatcctcgactactccgagttctgcatatttgttcg |
9326423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University