View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_12 (Length: 337)
Name: NF4486_low_12
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_12 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 148 - 337
Target Start/End: Complemental strand, 17899405 - 17899217
Alignment:
| Q |
148 |
atggatgtattcttactaactgccgccaaagtagatggcggtgggtatatcacccacttgtccatgttgtaggaatgaaaatgagtatgttctgcacgtg |
247 |
Q |
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| T |
17899405 |
atggatgtattcttactaactgccgccaaagtagatggcggtgggtatatcacccacttgtccatgttgtaggaatgaaaatgagtatgttctgcacgtg |
17899306 |
T |
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| Q |
248 |
ctccgtgacgtgtacgcatgcatatcagctatggaatatacttgttcctccagattgggtccctcacttttttcttttactggttgcaga |
337 |
Q |
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| T |
17899305 |
ctctgtgac-tgtacgcatgtatatcaggtatggaatatacttgcgcctccagattgggtcactaacttttttcttttgctgattgcaga |
17899217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 17901523 - 17901387
Alignment:
| Q |
14 |
tactcatcaattttccgttaagagtgcttacgatttatttgtttcaaatcatgtttttgcggagggggattgacaagtacaatggaaatgaaggggaaca |
113 |
Q |
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| T |
17901523 |
tactcatcaattctccgtcaagagtgcttacgatttacttgtttcaaatcatgttattgcggagggggatggacaagtactatggaaatgaaggggaatg |
17901424 |
T |
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| Q |
114 |
catcgtattcaaattttcaagtggttagtggctcatg |
150 |
Q |
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| T |
17901423 |
catcgtgttcaaattttcacgtggttaatggctcatg |
17901387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 42161915 - 42161796
Alignment:
| Q |
114 |
catcgtattcaaattttcaagtggttagtggctcatggatgtattcttactaactgccgccaaagtagatggcgg-tgggtatatcacccacttgtccat |
212 |
Q |
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| T |
42161915 |
catcttattcaaattttcatgtggttagtggctcatggtcgtattcttactaactaccgtcgaagtaggtgggggataggaatttcgcctacttgtcctt |
42161816 |
T |
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| Q |
213 |
gttgtaggaatgaaaatgag |
232 |
Q |
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| T |
42161815 |
gttgtgggaatgcaaatgag |
42161796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 43690861 - 43691039
Alignment:
| Q |
20 |
tcaattttccgttaagagtgcttacgatttatttgtttcaaatcatgtttttgcggagggggattgacaagtacaatggaaatgaaggggaacacatcgt |
119 |
Q |
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| T |
43690861 |
tcaattctccgtcatgagtgtttacgatttatttgtttcaaatcgtgttact-ctgaaggggattgagaagttctatggaattggaggggatcacatcat |
43690959 |
T |
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| Q |
120 |
attcaaattttcaagtggttagtggctcatggatgtattcttactaactgccgccaaagtagatggcggtgggtatatca |
199 |
Q |
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| T |
43690960 |
attcaaactttaatgtggttagttgctcatagacatattctgactaactactgccgaagtagatgggggtgggtatatca |
43691039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 45753549 - 45753481
Alignment:
| Q |
100 |
aatgaaggggaacacatcgtattcaaattttcaagtggttagtggctcatggatgtattcttactaact |
168 |
Q |
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| T |
45753549 |
aatggaggggaccacatcgtattcaaactttcatgtggttagtagctcatggtcgtattcttacaaact |
45753481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 46910901 - 46910957
Alignment:
| Q |
112 |
cacatcgtattcaaattttcaagtggttagtggctcatggatgtattcttactaact |
168 |
Q |
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| T |
46910901 |
cacatcgtattcaaactttcatgtggttagttgctcatggttgtattcttacaaact |
46910957 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 26207855 - 26207911
Alignment:
| Q |
112 |
cacatcgtattcaaattttcaagtggttagtggctcatggatgtattcttactaact |
168 |
Q |
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| T |
26207855 |
cacatcgtattcaaattttcatgtggttagtggcacacggtcgtattctcactaact |
26207911 |
T |
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