View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_16 (Length: 251)
Name: NF4486_low_16
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 38213878 - 38213635
Alignment:
| Q |
1 |
cgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatctta-----atttgtta |
95 |
Q |
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| T |
38213878 |
cgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatcttattttaatttgtta |
38213779 |
T |
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| Q |
96 |
tgattcttttattttatatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgtagtttgtatcacttcc |
194 |
Q |
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| T |
38213778 |
tgattctttgattttatatattcctctatatttttttggtgtctatcttagataacatgtgatcaaataaatcacattctttgtagtttgtaccacttcc |
38213679 |
T |
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| Q |
195 |
ttatcagttttcggtatattgagaacactatatataccctgttc |
238 |
Q |
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| T |
38213678 |
ttatcagttttcggtatattgagaacactatatataccctgttc |
38213635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 38218097 - 38217913
Alignment:
| Q |
1 |
cgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatc-----ttaatttgtta |
95 |
Q |
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| T |
38218097 |
cgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatcttattttaatttgtta |
38217998 |
T |
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| Q |
96 |
tgattcttttattttatatattcctctata-tattttggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
179 |
Q |
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| T |
38217997 |
tgattctttgattttatatattcctctatatttttttggtgtctattttagatagcacatgatcaaataaatcaaattctttgta |
38217913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 42993602 - 42993697
Alignment:
| Q |
85 |
ttaatttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
179 |
Q |
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||||||| |||||||||||| |||| ||| ||||||| ||| |||| ||||||| | ||| |||||| |||| ||||||||||||||||||||| |
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| T |
42993602 |
ttaatttattatgattctttgatttactatcttcctctgtatttttttggtgtctgttttatataacagatgatgaaataaatcaaattctttgta |
42993697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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