View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_17 (Length: 250)
Name: NF4486_low_17
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2114940 - 2114701
Alignment:
| Q |
1 |
tccacaaatacttgtagttcttctagttattgtaaaacgagcagcaaatgctattaaagttgtaattttaagaacatttctttaacaaatgtacctttta |
100 |
Q |
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| T |
2114940 |
tccacaaatacttgtagttcttctagttattgtaaaacgagcagcaaatgctattaaagttgtaattttaagaacatttctttaacaaatgtacctttta |
2114841 |
T |
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| Q |
101 |
agagtgatgagatggagatgataggtatgcaagattgaatatacgggttggtggtttaaaagagaatcagagtcatgaggttacttttcctaattttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2114840 |
agagtgatgagatggagatgataggtatgctggattgaatatacgggttggtggtttaaaagagaatcagagtcatgaggttacttttcctaattttgtt |
2114741 |
T |
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| Q |
201 |
ttaactatgttattggtgcgaaatttcaaccttgcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
2114740 |
ttaactatgttattggtgcgaaatttcaaccttgtctatg |
2114701 |
T |
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