View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_18 (Length: 249)
Name: NF4486_low_18
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 39082843 - 39083063
Alignment:
| Q |
16 |
agaggtaagatatacataaaataaaatgtaacagaggaaaaatattgaatgtaggttggtgcaaagctattagattctagtagtctaccatgtcttattg |
115 |
Q |
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| T |
39082843 |
agaggtaagatatacataaaataaaatgtaatggaggaaaaatattgaatgtaggttggtgcaaagctattagattctagtagtctaccatgtcttattg |
39082942 |
T |
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| Q |
116 |
attttatgtgtttttggaatgaaccattgggttatttatcagatcacgaagcatttttactcatcaaagggtgagtgggagaactggaattggagatctg |
215 |
Q |
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| T |
39082943 |
attttatgtgtttttggaatgaaccattgggttatttatcagatcacgaagcatttttactcatcaaagggtgagtgggagaactggaattggagatctg |
39083042 |
T |
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| Q |
216 |
aaggagatctaatgttgaatg |
236 |
Q |
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| T |
39083043 |
aaggagatctaatgttgaatg |
39083063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 31727773 - 31727894
Alignment:
| Q |
114 |
tgattttatgtgtttttggaatgaaccattgggttatttatcagatcacgaagcatttttactcatcaaagggtgagtgggagaactggaattggagatc |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| |
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| T |
31727773 |
tgattttttgtgtttttggaatgaaccattgggttatttatcagatcacgaagcatttttactcatcaaaaggtgagtgggagaactgg-actggagatc |
31727871 |
T |
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| Q |
214 |
tgaaggagatctaatgttgaatg |
236 |
Q |
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| T |
31727872 |
tgaaggagatctaatattgaatg |
31727894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 31727663 - 31727752
Alignment:
| Q |
33 |
aaaataaaatgtaacagaggaaaaatattgaatgtaggttggtgcaaagctattagattctagtagtctaccatgtcttattgattttatg |
123 |
Q |
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|||| ||||||||| || ||||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31727663 |
aaaaaaaaatgtaatagtggaaaaatatt-aatatagtttagtgcaaagctattagattctagtagtctaccatgtcttattggttttatg |
31727752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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