View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_19 (Length: 246)
Name: NF4486_low_19
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 40675661 - 40675857
Alignment:
| Q |
35 |
gagttatggtccaagcacggaatacgtggtttgtaggaacaccttcgccatgtgaagctgaagcaaacagtttaatgaagactctgatatggttacacgg |
134 |
Q |
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| T |
40675661 |
gagttatggtccaagcacggaatatgtggtttgtaggaacaccttcgccatgtgaagctgaagcaaacagtttaaggcagactctgatatggttacacgg |
40675760 |
T |
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| Q |
135 |
caaagagaagttgcacattgagctgcaaactctgacatggttacaaggcaaagaggagtttcatgttgagctagaaacagattgcaagcaaatagtg |
231 |
Q |
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| T |
40675761 |
caaagagaagttgcacattgagctgcaaactctgacatggttacaaggcaaagaggagtttcatgttgagctagaaacagattgcaagcaaatagtg |
40675857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 40684621 - 40684682
Alignment:
| Q |
35 |
gagttatggtccaagcacggaatacgtggtttgtaggaacaccttcgccatgtgaagctgaa |
96 |
Q |
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| T |
40684621 |
gagttatggtccaagcacggactgggtggtttataggaacaccttcgccaagcgaagctgaa |
40684682 |
T |
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