View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_2 (Length: 531)
Name: NF4486_low_2
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 43418263 - 43417769
Alignment:
| Q |
19 |
gaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaactcctccatgcatgaatgcatcaattcccacaggcttcgtgtcagagca |
118 |
Q |
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| T |
43418263 |
gaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaactcctccatgcatgaatgcatcaattcccacaggcttcgtgtcagagca |
43418164 |
T |
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| Q |
119 |
tattacttgatgaggaaaagaaaaggaagggacagagatacnnnnnnnnagcagctaattctatgacgtgtaatccatctgatggactatgcatatcact |
218 |
Q |
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| T |
43418163 |
tattacttgatgaggaaaggaaaaggaagggacagagatacttttttt-agcagctaattctatgacgtgtaatccatccgatggactatgcatatcact |
43418065 |
T |
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| Q |
219 |
catgtccctttcagtgttattagattttctttgcttttccaaataggagatgcagacaggtagacaatgttttctggtattaaattgaacatgaaatcac |
318 |
Q |
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| T |
43418064 |
catgtccctttcagtgttattagattttctttgcttttccaaataggagatgcagacaggtagacaatgttttctggtattaaattgaacatgaaatcac |
43417965 |
T |
|
| Q |
319 |
ttcaacatgttgagattctaaatttgtgttatgctttttagttactatacacttgcagtgtatataaccacagatatttgtacagatatgattgaatgtt |
418 |
Q |
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| T |
43417964 |
ttcaacatgttgagattctaaatttgtgttatgctttttagttactagacacttgcagtgtatataaccacagatatttgtacagatatgattgaatgtt |
43417865 |
T |
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| Q |
419 |
tgcgtaagaaaagttatgatgtcggtgtatagnnnnnnnnnnnnnnngaataagcaaaatttattaagccaagcatgtgaaagaatcacaagaaaact |
516 |
Q |
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| T |
43417864 |
tgcgtaagaaaagttatgatgtcggtgtatag--tttttttttttttgaataagcaaaatttattaagccaagcatgtgaaagaatcacaagaaaact |
43417769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 43403590 - 43403515
Alignment:
| Q |
85 |
atgcatcaattcccacagg-cttcgtgtcagagcatattacttgatgaggaaaagaaaaggaagggacagagatac |
159 |
Q |
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| T |
43403590 |
atgcatcaattcctacagggcttcgtgtcggagcatattacttgatgaggaaaggaaaaggaaagaatagagatac |
43403515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 43405443 - 43405369
Alignment:
| Q |
295 |
gtattaaattgaacatgaaatcacttcaaca---tgttgagattctaaatttgtgttatgctttttagttactat |
366 |
Q |
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| T |
43405443 |
gtataaaattgaacatgaaatcacttcaacaacatgtaaagattctaattttgtgctatgctttttagttactat |
43405369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 43406381 - 43406330
Alignment:
| Q |
19 |
gaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaac |
70 |
Q |
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| T |
43406381 |
gaagaataacacataaatgtcacttgtgaatgagaaaacaacctcgactaac |
43406330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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