View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_20 (Length: 243)
Name: NF4486_low_20
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17899194 - 17898971
Alignment:
| Q |
1 |
acaaaaggtggaatggagttgttgataatagttggaaaacaacattcatgactacttgttggcatttgtggacttgtagaaacaaatcaattttcaaaga |
100 |
Q |
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| T |
17899194 |
acaaaaggtggaatggagttgttgatactagttggaaaacaacattcatgactacttgttggcatttgtggacttgtagaaacaaatcaattttcaaaga |
17899095 |
T |
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| Q |
101 |
tggattctacagaccaactaacccaacctttgttatccaaaatttcattagtgttatagaagaaagttctcaaaatcatttgttagtcaatccccaacat |
200 |
Q |
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| T |
17899094 |
tggattctaaagaccaactaacccaacctttgttatccaaaatttcattagtgttatagaagaaagttctcaaaatcatttgttagtcaatccccaacat |
17898995 |
T |
|
| Q |
201 |
aaggaaactatgtttattggttgg |
224 |
Q |
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| T |
17898994 |
aaggaaactatgtttatcggttgg |
17898971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 27890281 - 27890127
Alignment:
| Q |
45 |
ttcatgactacttgttggcatttgtggacttgtagaaacaaatcaattttcaaagatggattctacagaccaactaacccaacctttgttatccaaaatt |
144 |
Q |
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| T |
27890281 |
ttcatgacaacctgttggcacttgtggactttgagaaacaaatcaatttttgaagaaagattccaaagaccgactaatccaacctatgttatctaaaatt |
27890182 |
T |
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| Q |
145 |
tcattagtgttatagaagaaagttctcaaaatcatttgttagtcaatccccaaca |
199 |
Q |
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| T |
27890181 |
acatcaggttcattgaagaaagttctcaaaatcatttgaaaatcaatcctcaaca |
27890127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 42161630 - 42161562
Alignment:
| Q |
39 |
acaacattcatgactacttgttggcatttgtggacttgtagaaacaaatcaattttcaaagatggattc |
107 |
Q |
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| T |
42161630 |
acaacgttcatgactacctgttggcatttgtcgacatggagaaacaaagctatttttgaagaaggattc |
42161562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 43691194 - 43691409
Alignment:
| Q |
3 |
aaaaggtggaatggagttgttgataatagttggaaaacaacattcatgactacttgttggcatttgtggacttgtagaaacaaatcaattttcaaagatg |
102 |
Q |
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| T |
43691194 |
aaaaggtggaatgaggctgtt-atactaggtggcaaacaacatttatggctacatgttgacatatgtggattttgagaaataaatcaatta-cgaagaag |
43691291 |
T |
|
| Q |
103 |
gattctacagaccaactaacccaacctttgttatccaaaatttcattagtgttatagaagaaagttctcaaaatcatttgttagtcaatccccaacataa |
202 |
Q |
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| T |
43691292 |
gatttcaaagaccaactaacccaacctttgttatccaaaatttcattaaagccatagcagaaaattctcaaaatcatgtgttggtcaatccccaacatta |
43691391 |
T |
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| Q |
203 |
ggaaactatgtttattgg |
220 |
Q |
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| T |
43691392 |
agaaactatgtttattgg |
43691409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 227
Target Start/End: Original strand, 26208141 - 26208335
Alignment:
| Q |
33 |
tggaaaacaacattcatgactacttgttggcatttgtggacttgtagaaacaaatcaattttcaaagatggattctacagaccaactaacccaacctttg |
132 |
Q |
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| T |
26208141 |
tggaaaacaactaacatgacaacctgttggcatttgtggacttggcgaaacaaatcaatttttgaagaaggaatccaaagaccggctaatccaccttatg |
26208240 |
T |
|
| Q |
133 |
ttatccaaaatttcattagtgttatagaagaaagttctcaaaatcatttgttagtcaatccccaacataaggaaactatgtttattggttggaag |
227 |
Q |
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| T |
26208241 |
ttatccaaaattacatcaggttcattgaagaaagttctcaaaatcatttgcaaatcaatcctcaacctaagggaactgtgtatattggatggaag |
26208335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 32992854 - 32992964
Alignment:
| Q |
40 |
caacattcatgactacttgttggcatttgtggacttgtagaaacaaatcaattttcaaagatggattctacagaccaactaacccaacctttgttatcca |
139 |
Q |
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|||| ||||||||||| ||||||||| |||||||||| ||||||||| | ||||| |||| ||||| | |||||| ||||||||| | ||| ||||| |
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| T |
32992854 |
caactttcatgactacatgttggcatatgtggacttggagaaacaaagctatttttgaagaaggatttcaaagaccagataacccaacttatgtcatcca |
32992953 |
T |
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| Q |
140 |
aaatttcatta |
150 |
Q |
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| T |
32992954 |
aaatttcatta |
32992964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 41550628 - 41550567
Alignment:
| Q |
33 |
tggaaaacaacattcatgactacttgttggcatttgtggacttgtagaaacaaatcaatttt |
94 |
Q |
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| T |
41550628 |
tggaagacaactttcatgactacttgttagcatttgtggaattggcgaaataaaacaatttt |
41550567 |
T |
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