View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4486_low_27 (Length: 233)

Name: NF4486_low_27
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4486_low_27
NF4486_low_27
[»] chr7 (16 HSPs)
chr7 (33-198)||(20092011-20092176)
chr7 (39-128)||(20229641-20229730)
chr7 (39-128)||(20262224-20262313)
chr7 (39-114)||(20241591-20241666)
chr7 (39-129)||(20292600-20292690)
chr7 (39-113)||(20271793-20271867)
chr7 (39-112)||(20064531-20064604)
chr7 (39-112)||(20301802-20301875)
chr7 (39-123)||(20170064-20170148)
chr7 (39-123)||(20172057-20172141)
chr7 (129-169)||(22829131-22829171)
chr7 (86-128)||(20277584-20277626)
chr7 (125-163)||(21677792-21677830)
chr7 (129-163)||(39146490-39146524)
chr7 (128-161)||(42222887-42222920)
chr7 (129-161)||(11355010-11355042)
[»] chr1 (9 HSPs)
chr1 (128-196)||(15669865-15669933)
chr1 (129-172)||(18801066-18801109)
chr1 (129-166)||(14184110-14184147)
chr1 (129-166)||(16430823-16430860)
chr1 (129-169)||(17323785-17323825)
chr1 (129-161)||(17352797-17352829)
chr1 (129-161)||(31423403-31423435)
chr1 (129-169)||(31489727-31489767)
chr1 (129-169)||(50249093-50249133)
[»] chr3 (12 HSPs)
chr3 (129-190)||(562187-562248)
chr3 (129-192)||(23636727-23636790)
chr3 (129-177)||(25635122-25635170)
chr3 (129-192)||(23633160-23633223)
chr3 (128-177)||(13420679-13420728)
chr3 (127-177)||(25633229-25633279)
chr3 (129-163)||(5927290-5927324)
chr3 (129-166)||(54692074-54692111)
chr3 (129-169)||(7754063-7754103)
chr3 (129-169)||(28100558-28100598)
chr3 (129-169)||(28137791-28137831)
chr3 (129-169)||(43423960-43424000)
[»] chr4 (7 HSPs)
chr4 (39-129)||(40821152-40821242)
chr4 (126-170)||(18537988-18538032)
chr4 (41-112)||(40825836-40825907)
chr4 (129-168)||(18535298-18535337)
chr4 (129-166)||(18409848-18409885)
chr4 (129-169)||(6132647-6132687)
chr4 (129-169)||(27498965-27499005)
[»] chr6 (5 HSPs)
chr6 (129-177)||(26944926-26944974)
chr6 (131-169)||(10583884-10583922)
chr6 (129-163)||(13870875-13870909)
chr6 (129-169)||(3632454-3632494)
chr6 (129-169)||(13056949-13056989)
[»] chr8 (4 HSPs)
chr8 (131-177)||(21482125-21482171)
chr8 (127-169)||(26774976-26775018)
chr8 (129-166)||(36865331-36865368)
chr8 (126-166)||(30481059-30481099)
[»] chr5 (3 HSPs)
chr5 (135-177)||(34531157-34531199)
chr5 (129-169)||(20042770-20042810)
chr5 (129-169)||(20044757-20044797)
[»] chr2 (4 HSPs)
chr2 (128-170)||(11740037-11740079)
chr2 (128-169)||(3021838-3021879)
chr2 (129-169)||(15539995-15540035)
chr2 (129-169)||(22163445-22163485)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 33 - 198
Target Start/End: Complemental strand, 20092176 - 20092011
Alignment:
Q  33 acaaaatatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaaaagtataaaactcatgtt 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20092176 acaacatatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaaaagtataaaactcatgtt 20092077  T
Q  133 gtgaaagtgacttaaaattgaagaaattggagttctgatgttgtctaatttggtggccgattttgc 198  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  20092076 gtgaaagtgacttaaaattaaagaaattggagttctgatgttatctaattcggtggccgattttgc 20092011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 20229641 - 20229730
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaaaagtataaaactca 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  20229641 tatggcagagttttcagcagccttcagatacattccttccaggcatgaaactttcagtcaacaaaagaactggtaagagtataaaactca 20229730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 20262224 - 20262313
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaaaagtataaaactca 128  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| ||| |||||||||    
T  20262224 tatggcagagtattcagcagccttcagatacattccttccaaacatgaaagtttcaatcaacaaaagaacgggtaagagtttaaaactca 20262313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 20241591 - 20241666
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaa 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |||||    
T  20241591 tatggcagagtattctgcagccttcagatacattccttccaggaatgaaaatttcaaacaacaaaagaaccggtaa 20241666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 20292600 - 20292690
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaaaagtataaaactcat 129  Q
    ||||||||||||||||||| ||||||||||| || |||||  |||||||||| ||||||||| ||||||||||||| | | ||||||||||    
T  20292600 tatggcagagtattcagcaaccttcagatacgttacttcctagcatgaaactatcaatcaaccaaagaacaggtaagaatgtaaaactcat 20292690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 20271793 - 20271867
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggta 113  Q
    ||||||||||||||||||| ||| |||||||||| || || || |||||||||||  ||||||||||||||||||    
T  20271793 tatggcagagtattcagcaacctacagatacattactgcctggtatgaaactttctgtcaacaaaagaacaggta 20271867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 20064604 - 20064531
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggt 112  Q
    ||||||||||||||||| | ||||| ||| |||| || || || ||||||||||| ||||||||||||||||||    
T  20064604 tatggcagagtattcaggaaccttctgattcattactgcctggtatgaaactttctatcaacaaaagaacaggt 20064531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 20301802 - 20301875
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggt 112  Q
    |||||||||||||||| || ||| |||||||||| ||  | || ||||||||||| ||||||||||||||||||    
T  20301802 tatggcagagtattcaacaacctacagatacattactgtctggtatgaaactttctatcaacaaaagaacaggt 20301875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 20170148 - 20170064
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaaaagtataaa 123  Q
    ||||||| ||||||||||| ||| |||||||||| || ||  | ||||| ||||||||||||||||||||| |||| ||| ||||    
T  20170148 tatggcaaagtattcagcaacctacagatacattactgcctagtatgaagctttcaatcaacaaaagaacaagtaagagtgtaaa 20170064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 20172141 - 20172057
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaaaagtataaa 123  Q
    ||||||| ||||||||||| ||| |||||||||| || ||  | ||||| ||||||||||||||||||||| |||| ||| ||||    
T  20172141 tatggcaaagtattcagcaacctacagatacattactgcctagtatgaagctttcaatcaacaaaagaacaagtaagagtgtaaa 20172057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 22829171 - 22829131
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  22829171 tgttgtgaaagtgactcaaaattgaagaaattggaattctg 22829131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 20277584 - 20277626
Alignment:
Q  86 aaactttcaatcaacaaaagaacaggtaaaagtataaaactca 128  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||    
T  20277584 aaactatcaatcaacaaaagaacaggtaagagtgtaaaactca 20277626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 21677792 - 21677830
Alignment:
Q  125 ctcatgttgtgaaagtgacttaaaattgaagaaattgga 163  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  21677792 ctcatgttgtgaaagtgcctcaaaattgaagaaattgga 21677830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 39146524 - 39146490
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattgga 163  Q
    |||||||||||||||| ||||||||||||||||||    
T  39146524 tgttgtgaaagtgactcaaaattgaagaaattgga 39146490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 42222887 - 42222920
Alignment:
Q  128 atgttgtgaaagtgacttaaaattgaagaaattg 161  Q
    ||||||||||||||||||||||||| ||||||||    
T  42222887 atgttgtgaaagtgacttaaaattggagaaattg 42222920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 11355010 - 11355042
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattg 161  Q
    |||||||||||||||| ||||||||||||||||    
T  11355010 tgttgtgaaagtgactcaaaattgaagaaattg 11355042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 15669933 - 15669865
Alignment:
Q  128 atgttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtctaatttggtggccgatttt 196  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  15669933 atgttgtgaaagtaacttaaaattgaagaaattggagttctgacgctgtctaattcggtggccgatttt 15669865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 18801109 - 18801066
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctgatg 172  Q
    |||||||||||||||| |||||||||| ||||||||||||||||    
T  18801109 tgttgtgaaagtgactcaaaattgaaggaattggagttctgatg 18801066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 14184147 - 14184110
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagtt 166  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  14184147 tgttgtgaaagtgacttaaaattggagaaattgaagtt 14184110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 16430823 - 16430860
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagtt 166  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  16430823 tgttgtgaaagtgactcaaaattgaataaattggagtt 16430860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 17323785 - 17323825
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  17323785 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 17323825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 17352797 - 17352829
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattg 161  Q
    |||||||||||||||| ||||||||||||||||    
T  17352797 tgttgtgaaagtgactcaaaattgaagaaattg 17352829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 31423435 - 31423403
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattg 161  Q
    |||||||||||||||| ||||||||||||||||    
T  31423435 tgttgtgaaagtgactcaaaattgaagaaattg 31423403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 31489727 - 31489767
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||| ||||||| ||||||||||||||||||||| |||||    
T  31489727 tgttgcgaaagtgccttaaaattgaagaaattggaattctg 31489767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 50249133 - 50249093
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  50249133 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 50249093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 562248 - 562187
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtctaatttggtggcc 190  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||    
T  562248 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgctgtctaattcggtggcc 562187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 23636727 - 23636790
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtctaatttggtggccga 192  Q
    |||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||    
T  23636727 tgttgtgaaagtgactcaaaattggagaaattggagttccgatgttgtctaattcggtggccga 23636790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 25635122 - 25635170
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtc 177  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25635122 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtc 25635170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 23633160 - 23633223
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtctaatttggtggccga 192  Q
    |||||||||||||||| ||||||||||||||| ||||| |||| |||||||||| |||||||||    
T  23633160 tgttgtgaaagtgactcaaaattgaagaaattagagttatgatattgtctaattcggtggccga 23633223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 13420728 - 13420679
Alignment:
Q  128 atgttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtc 177  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  13420728 atgttgtgaaagtgactcaaaattgaagaaattggagttctgatgctgtc 13420679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 25633229 - 25633279
Alignment:
Q  127 catgttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtc 177  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  25633229 catgttgtgaaagtgattcaaaattgaagaaattggagttctgatgctgtc 25633279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 5927324 - 5927290
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattgga 163  Q
    ||||||||||||| |||||||||||||||||||||    
T  5927324 tgttgtgaaagtgccttaaaattgaagaaattgga 5927290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 54692111 - 54692074
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagtt 166  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  54692111 tgttgtgaaagtgacttaaaattggagaaattgaagtt 54692074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 7754063 - 7754103
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  7754063 tgttgtgaaagtggctcaaaattgaagaaattggaattctg 7754103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 28100598 - 28100558
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  28100598 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 28100558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 28137831 - 28137791
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  28137831 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 28137791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 43424000 - 43423960
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  43424000 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 43423960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 40821242 - 40821152
Alignment:
Q  39 tatggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggtaaaagtataaaactcat 129  Q
    ||||| ||||||||||||| ||||||||||| || || ||  |||||||| | ||||||||||||||||||||||| | | ||||||||||    
T  40821242 tatggtagagtattcagcaaccttcagatacgttactacctagcatgaaaatatcaatcaacaaaagaacaggtaagaatgtaaaactcat 40821152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 18538032 - 18537988
Alignment:
Q  126 tcatgttgtgaaagtgacttaaaattgaagaaattggagttctga 170  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  18538032 tcatgttgtgaaagtgactcaaaattgaagaaattgaagttctga 18537988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 40825907 - 40825836
Alignment:
Q  41 tggcagagtattcagcagccttcagatacattccttccaggcatgaaactttcaatcaacaaaagaacaggt 112  Q
    ||||||||| ||||| | ||||| |||||| | || ||||||||||||||| ||| ||||||||||||||||    
T  40825907 tggcagagttttcagaaaccttcggatacacttctgccaggcatgaaacttacaagcaacaaaagaacaggt 40825836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 18535337 - 18535298
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttct 168  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  18535337 tgttgtgaaagtgactcaatattgaagaaattggagttct 18535298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 18409885 - 18409848
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagtt 166  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  18409885 tgttgagaaagtgactcaaaattgaagaaattggagtt 18409848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 6132647 - 6132687
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  6132647 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 6132687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 27498965 - 27499005
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  27498965 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 27499005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 26944926 - 26944974
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtc 177  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  26944926 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgctgtc 26944974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 10583884 - 10583922
Alignment:
Q  131 ttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  10583884 ttgtgaaagtgccttaaaattgaagaaattggaattctg 10583922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 13870909 - 13870875
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattgga 163  Q
    ||||||||||||| |||||||||||||||||||||    
T  13870909 tgttgtgaaagtgccttaaaattgaagaaattgga 13870875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 3632494 - 3632454
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  3632494 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 3632454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 13056949 - 13056989
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  13056949 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 13056989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 21482125 - 21482171
Alignment:
Q  131 ttgtgaaagtgacttaaaattgaagaaattggagttctgatgttgtc 177  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||||    
T  21482125 ttgtgaaagtgactcaaaattgaagaaattgaagttctgatattgtc 21482171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 26774976 - 26775018
Alignment:
Q  127 catgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||||| || |||||||||||||||||| |||||    
T  26774976 catgttgtgaaagtgcctcaaaattgaagaaattggaattctg 26775018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 36865331 - 36865368
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagtt 166  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  36865331 tgttgtgaaagtgacttaaaattggagaaattgaagtt 36865368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 30481099 - 30481059
Alignment:
Q  126 tcatgttgtgaaagtgacttaaaattgaagaaattggagtt 166  Q
    ||||||||||||||||||| ||||||| |||||||| ||||    
T  30481099 tcatgttgtgaaagtgactcaaaattggagaaattgaagtt 30481059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 34531199 - 34531157
Alignment:
Q  135 gaaagtgacttaaaattgaagaaattggagttctgatgttgtc 177  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  34531199 gaaagtgactcaaaattgaagaaattggagttctggtgttgtc 34531157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 20042770 - 20042810
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  20042770 tgttgtgaaagtgatttaaaattgaagaaattggaattctg 20042810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 20044757 - 20044797
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  20044757 tgttgtgaaagtgactcaaaattgaagaaattggaattctg 20044797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 11740079 - 11740037
Alignment:
Q  128 atgttgtgaaagtgacttaaaattgaagaaattggagttctga 170  Q
    |||||||||||||| || |||||||||||||||||| ||||||    
T  11740079 atgttgtgaaagtgcctcaaaattgaagaaattggaattctga 11740037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 3021838 - 3021879
Alignment:
Q  128 atgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    |||||||||||||| || |||||||||||||||||| |||||    
T  3021838 atgttgtgaaagtgcctcaaaattgaagaaattggaattctg 3021879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 15540035 - 15539995
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  15540035 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 15539995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 22163485 - 22163445
Alignment:
Q  129 tgttgtgaaagtgacttaaaattgaagaaattggagttctg 169  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  22163485 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 22163445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University