View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_3 (Length: 473)
Name: NF4486_low_3
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 49350731 - 49350289
Alignment:
| Q |
20 |
caaagatcagcaagggcattaaaaagcaccatcagcatcaaaagtggacattttccataaagggaatgaagtgaatatttttgtaacaacactaaaattt |
119 |
Q |
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| T |
49350731 |
caaagatcagcaagggcatttaaaagcaccatcagcatcaaaagtggacattttccataaagggaatgaagtgaatatttttgtaacaacactaaaaaaa |
49350632 |
T |
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| Q |
120 |
tttagcactgaagattagttaccaaagcaaattcatgaactgtttagggttatatttttatacagagaatgaagtcaagtaaattactctaatataaaat |
219 |
Q |
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| T |
49350631 |
tttagcactgaagattagttaccagagcaaattcatgaactgtttagggttatatttttatacagagaatgaagtcaagtaaattactctaatataaaat |
49350532 |
T |
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| Q |
220 |
taaacattaatgga-ttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatcct |
318 |
Q |
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| T |
49350531 |
taaacattaatggagttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatcct |
49350432 |
T |
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| Q |
319 |
tcatgaaccataaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagat |
418 |
Q |
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| T |
49350431 |
tcatgaaccataaaggatgcagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagat |
49350332 |
T |
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| Q |
419 |
acttgtgtgttttaaccttggaggaagtattctacctatgcta |
461 |
Q |
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| T |
49350331 |
acttgtgtgttttaacattggaggaagtattctacctatgcta |
49350289 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 425
Target Start/End: Complemental strand, 36663822 - 36663734
Alignment:
| Q |
330 |
aaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
425 |
Q |
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| T |
36663822 |
aaaggaagcagaagctgaggcacttaaagaacccatgt-------caaagattatatcacaacttcagtcttctttagttcaatcaaatacttgtg |
36663734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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