View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4486_low_4 (Length: 438)
Name: NF4486_low_4
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 47989291 - 47988881
Alignment:
| Q |
16 |
agaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtgacattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47989291 |
agaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtgacattc |
47989192 |
T |
|
| Q |
116 |
cttcattgaatcctatatatgttgattcttcaaagccaataacagttagacctctttctattgtatttgctcatataccagatgctgctgttaaagcttg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47989191 |
cttcattgaatcctatatatgttgattcttcaaagccaataacagttaggcctctttctattgtatttgcacatataccagatgctgctgttaaagcttg |
47989092 |
T |
|
| Q |
216 |
cagctagctagctcaatggcactaggaaaaaccgaaaatcggtttcccttggtgattgataagaaaattaaacacagtataatacaagaaaagtactagt |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47989091 |
cagctagctagctcaatggcactaggcaaaaccgaaaatcggtttcccttggtgattgataagaaaattaaacacagtataatacaagaaaagtactagt |
47988992 |
T |
|
| Q |
316 |
gttagattgtttggagggcgaagccctaggattttgatttattttgcataatcccaatgcactattcagttcattatgataattgtaaatttcattataa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47988991 |
gttagattgtttggagggcgaagccctaggattttgatttattttgcataatcccaatgcactattcagttcattatgataattgtaaatttcattataa |
47988892 |
T |
|
| Q |
416 |
attgaaagtga |
426 |
Q |
| |
|
||||||||||| |
|
|
| T |
47988891 |
attgaaagtga |
47988881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 26 - 422
Target Start/End: Complemental strand, 47978925 - 47978529
Alignment:
| Q |
26 |
accatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtgacattccttcattgaa |
125 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||| ||| ||||||||||| |||||| || |||| |
|
|
| T |
47978925 |
accatttaacagcaaaggatggagatttacatagccaaattatgttactaaatggaaacatcctaagtgtaaactcagctggtgatattcctccactgaa |
47978826 |
T |
|
| Q |
126 |
tcctatatatgttgattcttcaaagccaataacagttagacctctttctattgtatttgctcatataccagatgctgctgttaaagcttgcagctagcta |
225 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||| ||| || | |||| ||||| ||| ||||||||||||| |
|
|
| T |
47978825 |
tcctatatatgttgactcttcaaagccaataacacttgatcctctctctattgtatttgttcaaattcaagatactgctattaccatttgcagctagcta |
47978726 |
T |
|
| Q |
226 |
gctcaatggcactaggaaaaaccgaaaatcggtttcccttggtgattgataagaaaattaaacacagtataatacaagaaaagtactagtgttagattgt |
325 |
Q |
| |
|
||||||| ||||||| ||||| ||||| |||||| ||||||||||||||| ||||| ||||| || | ||| | ||||| ||| | ||||||||||| |
|
|
| T |
47978725 |
gctcaatatcactaggtgaaaccaaaaataggtttctcttggtgattgataataaaataaaacatagaaatataaaggaaaaataccactgttagattgt |
47978626 |
T |
|
| Q |
326 |
ttggagggcgaagccctaggattttgatttattttgcataatcccaatgcactattcagttcattatgataattgtaaatttcattataaattgaaa |
422 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||| || ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
47978625 |
ttggagggtcgagcactaggattttgattggttttgcatattctcaatgcactattcagtttattatgactattgtaaattttattataaattgaaa |
47978529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 38356305 - 38356188
Alignment:
| Q |
14 |
agagaagagagtaccatttaacagcaaaggatggaaatttacatagccaaactatggtactaaatggaaacattctaagtggaaattcagctggtgacat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||| |||||| |||||| ||| ||||||||||| || |
|
|
| T |
38356305 |
agagaagagagtaccatttaacagcaaaggatggaaatttacgttgccaaactatgctgctaaatggtaacattttaagtgtaaactcagctggtgatat |
38356206 |
T |
|
| Q |
114 |
tccttcattgaatcctat |
131 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
38356205 |
tcctctattgaatcctat |
38356188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University