View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_5 (Length: 403)
Name: NF4486_low_5
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Complemental strand, 40839972 - 40839603
Alignment:
| Q |
11 |
caaaggcgatattgttttagagtgtggcttattaattcgatgtgcggatggagaatggcttagtggtttctacaaggatattggaagttgtagtgcgtat |
110 |
Q |
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| T |
40839972 |
caaaggcgatattgttttagagtgtggcttattaattcgatgtgcggatggagaatggcttggtggtttctacaaggatattggaagttgtagtgcgtat |
40839873 |
T |
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| Q |
111 |
atagccgaactgcagctggtgtgtattgattctgaatcggtcggtaagagtatttagcaaaatgggagtgtaacgtgttagtgctaatgggtggagatta |
210 |
Q |
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| T |
40839872 |
atagccgaactgcagctggtgtgtattgattctgaatcggtcggtaagagtatttagcaaaatgggagtgtaacgtgttagtgctaatgggtggagatta |
40839773 |
T |
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| Q |
211 |
gtgcagaaaatccatcagcttctgaattgatgtatatgagtaattgttctgtctttgacatta-gtatcattcacttaccctagtaaatttctattcaaa |
309 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40839772 |
gtgcagaaaatccaccagcttctgaattgatgtatatgagtaattgttctgtctttgacattaggtatcattcacttaccctagtaaatttctattcaaa |
40839673 |
T |
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| Q |
310 |
agcagtttctatattctgtttgtcatagtatatgtttccaagataaagaaggatacaattctcaaaattg |
379 |
Q |
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| T |
40839672 |
agcagcttctatattctgtttgtcatagtatatgtttccaagataaagaaggatacaattctcaaaattg |
40839603 |
T |
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