View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4486_low_7 (Length: 390)
Name: NF4486_low_7
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4486_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 32731485 - 32731200
Alignment:
| Q |
1 |
attattctctgtctgaaatatgcaatgaagcaactataggcgtgggtgatcatttaaaaattcaatatagtgatttatgtcaatgaataagttatcaacg |
100 |
Q |
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| T |
32731485 |
attattctctgtctgaaatatgcaatgaagcaactataggcgtgggtgatcatttaaaaattcaatatagtgatttatgtcaatgaataagttatcaaca |
32731386 |
T |
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| Q |
101 |
atattgtgcccttagaggtagacaacattaattatgtttcctcattatnnnnnnntacctatgataattagtctagtgacgagtattgaatcttaaacag |
200 |
Q |
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| T |
32731385 |
atattgtgcccttagaggtagacaacattaattatgtttcctcattataaaaaaatacctatgataattagtctagtgacgagtattgaatcttaaacag |
32731286 |
T |
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| Q |
201 |
atacctagggatcagtgaagggtcattctaattgatacaccttcattaaaaaatagaactgtacccatcaacaagagaacctatatct |
288 |
Q |
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| T |
32731285 |
atacct--tgatcagtgaagggtcattctaattgatacaccttcattaaaaaatagaactgtacccatcaacaagagaacctatatct |
32731200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 32731213 - 32731142
Alignment:
| Q |
304 |
gagaacctatatctaacacagctcttcgattaatgaaaaatctcgatattgttaatgaaaaatatctaatgt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32731213 |
gagaacctatatctaacacagctcttcgattaatgaaaaatctcgatattgttaatgaaaaatatctaatgt |
32731142 |
T |
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