View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4486_low_8 (Length: 390)

Name: NF4486_low_8
Description: NF4486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4486_low_8
NF4486_low_8
[»] chr3 (2 HSPs)
chr3 (18-371)||(38213980-38214333)
chr3 (18-371)||(38218199-38218552)
[»] chr8 (3 HSPs)
chr8 (18-252)||(42991291-42991523)
chr8 (59-252)||(35017979-35018172)
chr8 (116-157)||(33811108-33811149)
[»] chr7 (4 HSPs)
chr7 (75-204)||(37188902-37189031)
chr7 (86-147)||(32715057-32715118)
chr7 (86-147)||(32709835-32709896)
chr7 (86-147)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (83-147)||(10411404-10411468)
chr6 (83-147)||(10379762-10379826)
[»] chr4 (6 HSPs)
chr4 (89-205)||(53492975-53493091)
chr4 (89-204)||(53499268-53499383)
chr4 (115-188)||(53495378-53495451)
chr4 (97-183)||(53488672-53488758)
chr4 (116-186)||(53502408-53502478)
chr4 (89-204)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (92-183)||(16942656-16942747)
chr2 (92-183)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (116-157)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 38213980 - 38214333
Alignment:
Q  18 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38213980 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 38214079  T
Q  118 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214080 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 38214179  T
Q  218 atccttattggggtgttgtcaaccaaaaatctgcatttagttacatgaacttgttagagtgtttgttatacacacataattgagttctttatacaaacac 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  38214180 atccttattggggtgttgtcaaccaaaaatctgcaattagttacatgaacttgttagcgtgtttgttataagcacataattgagttctttatacaaacac 38214279  T
Q  318 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214280 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagt 38214333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 38218199 - 38218552
Alignment:
Q  18 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218199 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 38218298  T
Q  118 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218299 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 38218398  T
Q  218 atccttattggggtgttgtcaaccaaaaatctgcatttagttacatgaacttgttagagtgtttgttatacacacataattgagttctttatacaaacac 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  38218399 atccttattggggtgttgtcaaccaaaaatctgcaattagttacatgaacttgttagcgtgtttgttataagcacataattgagttctttatacaaacac 38218498  T
Q  318 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218499 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagt 38218552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 42991523 - 42991291
Alignment:
Q  18 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 117  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42991523 cagagaaggaagtggaagagacag--gataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaacc 42991426  T
Q  118 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 217  Q
    |||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  42991425 acctcttgtagcccaatcttcagcgttccaaagacttgaatatattctcatcggttggttctttgggaaaggaatactaatagattcagcattcttgaag 42991326  T
Q  218 atccttattggggtgttgtcaaccaaaaatctgca 252  Q
    |||||||||||| ||||||||||||| ||||||||    
T  42991325 atccttattgggatgttgtcaaccaagaatctgca 42991291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 59 - 252
Target Start/End: Complemental strand, 35018172 - 35017979
Alignment:
Q  59 ttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaat 158  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || || ||||    
T  35018172 ttgaaattacggtagtatgctgtaaagggtgctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaat 35018073  T
Q  159 agattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattggggtgttgtcaaccaaaaatctgca 252  Q
    ||||||||||||||||||||||||| || |||| |||||| |||||| |||||||||| | |||||||||  |||| |||||||| ||||||||    
T  35018072 agattctcattggttggttctttggaaaaggaacaccaatagattcaacattcttgaatacccttattggcatgttatcaaccaagaatctgca 35017979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 33811108 - 33811149
Alignment:
Q  116 ccacctcttgtagcccaatcatcagcattccagagacttgaa 157  Q
    ||||||||||||||||||||||| |||||||| | |||||||    
T  33811108 ccacctcttgtagcccaatcatctgcattccatacacttgaa 33811149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 37189031 - 37188902
Alignment:
Q  75 aagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttg 174  Q
    |||| ||||| || || ||||||||||| || || || |  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  37189031 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaatagattctcattggttg 37188932  T
Q  175 gttctttgggaatggaataccaattgattc 204  Q
    | | || |||||||||| |||| |||||||    
T  37188931 gcttttggggaatggaacaccatttgattc 37188902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 32715118 - 32715057
Alignment:
Q  86 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 147  Q
    |||||||| |||||||| |||||| |||||||||||||||| ||||||||||| ||||||||    
T  32715118 ggtgcttttgaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 32715057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 32709896 - 32709835
Alignment:
Q  86 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 147  Q
    ||||||||||||||||| |||||| | || ||||||||||| ||||||||||| ||||||||    
T  32709896 ggtgctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattcca 32709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 32718496 - 32718435
Alignment:
Q  86 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 147  Q
    |||||||| ||||||||||||||  | || ||||| ||||| ||||||||||| ||||||||    
T  32718496 ggtgcttttgaccaatcagttttttctaatccaccccttgtggcccaatcatctgcattcca 32718435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 10411468 - 10411404
Alignment:
Q  83 aagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 147  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  10411468 aagggtgctttggaccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattcca 10411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 10379762 - 10379826
Alignment:
Q  83 aagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 147  Q
    |||||||||||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||    
T  10379762 aagggtgctttggaccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattcca 10379826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 53493091 - 53492975
Alignment:
Q  89 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 188  Q
    |||||||||||||| || || || |  || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||    
T  53493091 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53492992  T
Q  189 gaataccaattgattca 205  Q
    |||  ||| ||||||||    
T  53492991 gaacgccacttgattca 53492975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 53499383 - 53499268
Alignment:
Q  89 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 188  Q
    |||||||||||||| || || || |  || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||    
T  53499383 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53499284  T
Q  189 gaataccaattgattc 204  Q
    | | |||| |||||||    
T  53499283 gtacaccatttgattc 53499268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 53495451 - 53495378
Alignment:
Q  115 accacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 188  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||    
T  53495451 accacctcttgttgcccaatcatcagcattccatagacttgaatatatcctcattggttgattctttggaaatg 53495378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 53488672 - 53488758
Alignment:
Q  97 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 183  Q
    |||||| |||||||| | |||||||||||| ||||||||||| |||||||| ||||||||||| | ||||||||| || ||||||||    
T  53488672 ccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaatataatctcattggctgcttctttgg 53488758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 53502478 - 53502408
Alignment:
Q  116 ccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaa 186  Q
    ||||||||||| ||||| | ||| |||||||| | ||||||||| ||||||||||||||||||||||||||    
T  53502478 ccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggttggttctttgggaa 53502408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 52591128 - 52591013
Alignment:
Q  89 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 188  Q
    |||| |||||||||||||||| | | ||| || ||||| ||||||| ||| |||| ||| ||||||||||| || ||||||| |||| | || || || |    
T  52591128 gcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattgcttggcttttaggaaaag 52591029  T
Q  189 gaataccaattgattc 204  Q
    |||||||  |||||||    
T  52591028 gaataccttttgattc 52591013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 16942747 - 16942656
Alignment:
Q  92 ttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 183  Q
    |||| |||||| |||||||| |  |||||||| || ||||||| ||| |||||||| ||||||||||| || ||||| | ||||||||||||    
T  16942747 ttggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttgg 16942656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 17013412 - 17013321
Alignment:
Q  92 ttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 183  Q
    |||| |||||| |||||||| |  |||||||| || ||||||| ||| |||||||| ||||||||||| || ||||| | ||||||||||||    
T  17013412 ttggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttgg 17013321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 47495969 - 47495928
Alignment:
Q  116 ccacctcttgtagcccaatcatcagcattccagagacttgaa 157  Q
    ||||||||||||||||||||||| |||||||| | |||||||    
T  47495969 ccacctcttgtagcccaatcatctgcattccatacacttgaa 47495928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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