View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4487-Insertion-1 (Length: 981)
Name: NF4487-Insertion-1
Description: NF4487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4487-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 7 - 606
Target Start/End: Complemental strand, 41154486 - 41153873
Alignment:
| Q |
7 |
aaaactcaccctgaggacaagacaatttcaaagacgagtgcataaaaaacgcaaataacaaacacaattgtgttttataatgtcaaacatcacgaaggag |
106 |
Q |
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| T |
41154486 |
aaaactcaccctgaggacaagacaatttcaaagacgagtacataaaaaacgcaaataacaaacacaattgtgttttataatgtcaaacatcacgaaggag |
41154387 |
T |
|
| Q |
107 |
ccaaaatgaaacagctggaagtgcaaactaaaatatatggtttgcattttttaattgaaattcaaatgtgagtgatagtcttacatggacgagaaatgag |
206 |
Q |
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| T |
41154386 |
ccaaaatgaaacagctggaagtgcaaactaaaatatatgatttgcaatttttaattggaatttaaatgtgagtgatagtcttacatggacgagaaatgag |
41154287 |
T |
|
| Q |
207 |
gtaaataaataagtgactcagtatatgaaaaaagtgactcctatatttgaaatcgtaaatgaannnnnnnnnacttgtttacttggtctattggcttaaa |
306 |
Q |
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| T |
41154286 |
gtaaataaataagtgactc-gtatatgaaaaaagtgactcctatatttgaaatcgtaaatggatttttttttacttgtttacttggtctattgacttaaa |
41154188 |
T |
|
| Q |
307 |
tttatcttgatgtcaaatatg--aaaaagtgactcttatagttatacttgaattcgtaaatgaac-ttttttacttgtttacttggtccattagcttaaa |
403 |
Q |
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| T |
41154187 |
tttatcttgatgtcaaatatgaaaaaaagtgactcttatagttatacttgaattcgtaaatgaactttttttacttgtttacttggtccattagcttaaa |
41154088 |
T |
|
| Q |
404 |
tttatcttcatctcaaattaagttatctagtatattgttccgggt--------------acttattataataannnnnnnataccttggaattcaccttc |
489 |
Q |
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| T |
41154087 |
tttatcttcatctcaaattaagttatctagtatattgttccgggtactttttaattttaactttttataataatttttttataccttggaattcaccttc |
41153988 |
T |
|
| Q |
490 |
caccaaaagatcacaataatattaccaatgaaaaattagagttttacgatattcatgtatgtatatagttggtgtaaaagatggaagtcaataatgaata |
589 |
Q |
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| T |
41153987 |
caccaaaagatcacaataatattaccaatgaaaaattagagttttacgatattcatgtatg--tatagttggtgtaaaagatggaagtcaataatgaata |
41153890 |
T |
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| Q |
590 |
gttaggcgagatacatg |
606 |
Q |
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| T |
41153889 |
gttaggcgagatacatg |
41153873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 626 - 936
Target Start/End: Complemental strand, 41153822 - 41153504
Alignment:
| Q |
626 |
attctcatttgttataatgattgcaatctcacacacata--caactgaacgacccaaattcaattctcggttacgacatttaacatagcaatttcgacan |
723 |
Q |
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| T |
41153822 |
attctcatttattataatgattgcaatctcacacacacatgcaactgaacgacccaaattcaattctcggtcacgacgtttagtatagcaatttcgacat |
41153723 |
T |
|
| Q |
724 |
nnnnnncatttgagctagaatttattggcagtttataattgagtttgagatcttataagaagtcttataa-ctctacgttgttttttataagctccacgt |
822 |
Q |
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| T |
41153722 |
tttttttatttgagctagaatttatgggcagtttataattgagtttgagatcttataagaagtcttataagctctacgttgttttttataagctccacgt |
41153623 |
T |
|
| Q |
823 |
tgaagttaatcgaaatacatctagttcggtattgaagggc-aaacttaaatttcattactta-ttttacaagctcc-agttggtttttattttaaa--tt |
917 |
Q |
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|||||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||| || |
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| T |
41153622 |
tgaagttaatcgaaatacatctagttcgatattgaagtgcaaaacttaaatttatttacttatttttataagctccaagttgttttttattttaaaattt |
41153523 |
T |
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| Q |
918 |
aaaatgtctcaatacaaaa |
936 |
Q |
| |
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||||||||||||||||||| |
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| T |
41153522 |
aaaatgtctcaatacaaaa |
41153504 |
T |
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Back To:
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