View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4487-Insertion-2 (Length: 716)
Name: NF4487-Insertion-2
Description: NF4487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4487-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 165 - 515
Target Start/End: Complemental strand, 26217609 - 26217246
Alignment:
| Q |
165 |
aatccagcctatcataggatttactaatataaagtctatgagctacattaccttgattaactttcagct-------------atgaacaatttcaatggt |
251 |
Q |
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| T |
26217609 |
aatccaacctatcataggatttactaatataaagtctatgagctacattaccttgattaactttcaccttaggtttcacacgatgaacaatttcaatggt |
26217510 |
T |
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| Q |
252 |
tgtcattgcgttatcgagaatagagtaacttgacacaaaagctgattgatttgtgtatatacacttatcaagtacactttcaacatgttggctaatactt |
351 |
Q |
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| T |
26217509 |
tgtcattgcattatcgagaatagagtaacttgacacaaaagctgattgatttttgtatatacacttatcaagtacactttcaacatgttggctaatactt |
26217410 |
T |
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| Q |
352 |
taaccgcaactttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagcttgtaattaggctagg |
451 |
Q |
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| T |
26217409 |
taaccacaactttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagtttgtaattaggctagg |
26217310 |
T |
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| Q |
452 |
aggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatcatgaccacaatttttc |
515 |
Q |
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| T |
26217309 |
aggaaagataacagagaccttcaaagtgcaacccgcagtaaatatatgatgaccacaatttttc |
26217246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 512 - 716
Target Start/End: Complemental strand, 26217187 - 26216983
Alignment:
| Q |
512 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcagcaaatagaaactcattatccatactagtgaatagtgatagatggattaatggc |
611 |
Q |
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| T |
26217187 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggattaatggt |
26217088 |
T |
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| Q |
612 |
attaagaatcgcctcactggagctattctgcttttgaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccacgttctacatattgtg |
711 |
Q |
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| T |
26217087 |
attaagaatcgcctcactggtgctattctgcttctaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccgcgttctacatattgtg |
26216988 |
T |
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| Q |
712 |
ccatc |
716 |
Q |
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| T |
26216987 |
ccatc |
26216983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 26217712 - 26217609
Alignment:
| Q |
7 |
aagggtccccttgttgacgacctcttgga-gtatgatagggtccactacacttctattaacgatgaaggactaatccataattcaaacacacaacataat |
105 |
Q |
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||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
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| T |
26217712 |
aagggtccccttgttgaagacctcttgcaagtatgacagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataat |
26217613 |
T |
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| Q |
106 |
cgaa |
109 |
Q |
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|||| |
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| T |
26217612 |
cgaa |
26217609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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