View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4487_high_1 (Length: 431)
Name: NF4487_high_1
Description: NF4487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4487_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 29 - 415
Target Start/End: Original strand, 22191491 - 22191886
Alignment:
| Q |
29 |
aaaaataaaaccatgataacaa---gccaaaaccaactgtcagaccatattgattttctgcagtcaatgaataccgtactaatgcctcggacattgtgat |
125 |
Q |
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| T |
22191491 |
aaaaaaaaaaccatgataacaacaagccaaaaccaactgtcggaccatattaattttcttcagtcaatgaataccgtactaatgcctcggacattgtgat |
22191590 |
T |
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| Q |
126 |
atagtcaagcctagaacattggtgaaaac----gaatccttgtagcattgtnnnnnnn-ccttacgatcagactcgatttacacattagagaa-ccaaat |
219 |
Q |
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| T |
22191591 |
atagtcaagcctagaacattggtgaaaaccctcgaatccttgtagaattgtaaaaaaaaccttacgatcagactcgatttacacattagagaaaccaaat |
22191690 |
T |
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| Q |
220 |
tcaagagctagttgaagagagctgagtatagcatgtggcacgccttcagccatgtcgatgcgggaggttgtccatgatgtccaaacacaaataaattcat |
319 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22191691 |
tcaagagctagttgaagagagctgagtatagaatgtggcacgccttcagccatgtcgatgcgggaggttgtccatgatgtccaaacacaaataaattcat |
22191790 |
T |
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| Q |
320 |
taggctgcctctaaaacatattccatttccagttttctgttattgtgttgcaagatgtgaaaaacagactatgatagttatctccacgtggaaggt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22191791 |
taggctgcctctaaaacatattccatttccagttttctgttattgtgttgcaagatgtgaaaaacagactatgatagttatctccacgtggaaggt |
22191886 |
T |
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