View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4487_high_7 (Length: 249)
Name: NF4487_high_7
Description: NF4487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4487_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 54396470 - 54396702
Alignment:
| Q |
1 |
aacgtgcacctgatgttgtgggatagctagttgtgtggatgttatatctggcctcagtaccaagaacactatgaacaaattcaagcatggactctaatga |
100 |
Q |
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| T |
54396470 |
aacgtgcacctgatgttgtgggatagctagttgtgtgaatgttatatctggcctcagtaccaagaacactatgaacaaattcaagcatggactctaatga |
54396569 |
T |
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| Q |
101 |
agtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtcttcaccttggggggaatcttttgtgagagag |
200 |
Q |
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| T |
54396570 |
agtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtcttcaccttggggggaatcttttgtgagagag |
54396669 |
T |
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| Q |
201 |
aatatttgaagaaggcttggtagttgtgacttg |
233 |
Q |
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| T |
54396670 |
aagagttgaagaaggcttggtagttgtgacttg |
54396702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 54381592 - 54381818
Alignment:
| Q |
7 |
cacctgatgttgtgggatagctagttgtgtggatgttatatctggcctcagtaccaagaacactatgaacaaattcaagcatggactctaatgaagtagg |
106 |
Q |
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| T |
54381592 |
cacctgatgttgtcggatagctagttgtgtgaatgttatatctggcctcggcaccgagaacgctgtgaacaaattcaagcatggactctaaagaagtggg |
54381691 |
T |
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| Q |
107 |
acaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtcttcaccttggggggaatcttttgtgagagagaatatt |
206 |
Q |
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| T |
54381692 |
acaggccttggtctccccttttgtgggttcaaactcacattgatcaattatgtctttcatatcttcaccttggggagagtcttttgtgagtgagaatagt |
54381791 |
T |
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| Q |
207 |
tgaagaaggcttggtagttgtgacttg |
233 |
Q |
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| T |
54381792 |
tgaagaaggctaggtagttgcgacttg |
54381818 |
T |
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