View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4487_low_2 (Length: 374)
Name: NF4487_low_2
Description: NF4487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4487_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 34540503 - 34540854
Alignment:
| Q |
16 |
ccttttacctaacacaattacatgatttgttgtttttgaatttacattattaatccttttaatttgacttgggtaaaaccctacatgcttgagatattta |
115 |
Q |
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| T |
34540503 |
ccttttacctaacacaattacatgatttgttgtttttgaatttacattattaatccttttaatttgacttgggtaaaaccctacatgcttgagatattta |
34540602 |
T |
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| Q |
116 |
aactaatactagtggataa---taaattaagtataattaaaatagaaagcacacccacgcattgcagagacttggtcgtttttagattcctatgtaaagc |
212 |
Q |
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| T |
34540603 |
aactaatactagtggataataataaattaagtataattaaaatagaaagcacacccacgcattgcagagacttggtcgtttttagattcctatgtaaagc |
34540702 |
T |
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| Q |
213 |
atattgtaaaatatcaacatgtaatagataaataaatgttttataacctaataacaagctcacatggtcacatgtgtatgtttgttgaagaaaattgcac |
312 |
Q |
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| T |
34540703 |
aaattataaaatatcaacatgtaatagataaataaatgttttataacctaataacaagctcacatggtcacatgggtatgtttgttgaagaaaattgcac |
34540802 |
T |
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| Q |
313 |
aactagtcaaataaactacagtgacttgattcccaagctgcttcatctcatt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34540803 |
aactagtcaaataaactacagtgacttgattcccaagctgcttcatttcatt |
34540854 |
T |
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