View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4487_low_5 (Length: 282)
Name: NF4487_low_5
Description: NF4487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4487_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 47285692 - 47285432
Alignment:
| Q |
19 |
accgtacacgtgtccagagtgcaacaaagtaatagcaacatcacagaaattcgctgctcatgcatcaagtcactacaagactgaaagtgaagaagagaga |
118 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47285692 |
accgtacacgtgttcagagtgcaacaaagtaatagcaacatcacagaaattcgctgctcatgtatcaagtcactacaagactgaaagtgaagaagagaga |
47285593 |
T |
|
| Q |
119 |
aaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttctattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
47285592 |
aaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaaagctcgatgatggaacaactactcttgtttctgtcattgcttttattg |
47285493 |
T |
|
| Q |
219 |
atcagtcacatgctccttctttcagttatgatactcaaaatatgagcgcctatgctactcc |
279 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
47285492 |
atcagtcgcatgctccttctttcagttatgatactcaaaatataagcgcctgtgctcctcc |
47285432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 47307242 - 47307007
Alignment:
| Q |
26 |
acgtgtccagagtgcaacaaagtaatagcaacatcacagaaattcgctgctcatgcatcaagtcactacaagactgaaagtgaagaagagagaaaaaaga |
125 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||| | |||||||||||||||| |||||||| |
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| T |
47307242 |
acgtgtccaaagtgtaacaaagtactagcaacatcacaaaaatttgctagtcatgcatcaatacactacaagtcagaaagtgaagaagagaaaaaaaaga |
47307143 |
T |
|
| Q |
126 |
gatacatgtctaggatccgaaagagaccagatctccagattc-aaaagctcgatgatggaacaactactcttgttcctgtcattgcttctattgatcagt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||| |||||||||| |||| |||| |
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|
| T |
47307142 |
gatacatgtctaggatccgaaagagaccagatctcc-gattccaaaagctcaatgatggaacaactacttttgttcc---cattgcttctgttgaccagt |
47307047 |
T |
|
| Q |
225 |
cacatgctccttctttcagttatgatactcaaaatatgag |
264 |
Q |
| |
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|||||||| |||| | |||||| ||| ||| |||||||| |
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|
| T |
47307046 |
cacatgctgtttctgtaagttataataatcataatatgag |
47307007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 43 - 264
Target Start/End: Complemental strand, 2589715 - 2589494
Alignment:
| Q |
43 |
caaagtaatagcaacatcacagaaattcgctgctcatgcatcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatc |
142 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||| |
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|
| T |
2589715 |
caaagtaatttcaacatcccagaaattcgctagtcatgtgacaagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatc |
2589616 |
T |
|
| Q |
143 |
cgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttctattgatcagtcacatgctccttctttca |
242 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||| || |||||||| ||||||| || |||||| ||| ||| |
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|
| T |
2589615 |
cgaaagagaccaaatctccggattcaaaagctcaatgatggaacaactacttttgttccagttgttgcttctgttgatcaatctcatgctactttggtca |
2589516 |
T |
|
| Q |
243 |
gttatgatactcaaaatatgag |
264 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
2589515 |
attatgataatcaaaatatgag |
2589494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 2589735 - 2589978
Alignment:
| Q |
21 |
cgtacacgtgtccagagtgcaacaaagtaatagcaacatcacagaaattcgctgctcatgcatcaagtcactacaagactgaaagtgaagaagagagaaa |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| || ||||| | | | || ||||||||||||| |||||| | || | || || || |
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|
| T |
2589735 |
cgtacacgtgtccaaagtgcaacaaagtaatttcaacatcccataaatttggtagtgatatggcaagtcactacaattctgaaactcaaaaggaaaggaa |
2589834 |
T |
|
| Q |
121 |
aaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttctattgat |
220 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||| || |||||||| ||| ||| ||||||||| ||| |||||| || ||| |||| ||||| |
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|
| T |
2589835 |
aaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttcgagttgttgtttctgttgat |
2589934 |
T |
|
| Q |
221 |
cagtcacatgctccttctttcagttatgatactcaaaatatgag |
264 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||| |||||||||||| |
|
|
| T |
2589935 |
cagtcgcatgctgcttctgtcaattatgataatcaaaatatgag |
2589978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 10299796 - 10300039
Alignment:
| Q |
21 |
cgtacacgtgtccagagtgcaacaaagtaatagcaacatcacagaaattcgctgctcatgcatcaagtcactacaagactgaaagtgaagaagagagaaa |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| || |||| ||| ||||| ||| ||||||||| ||||| | |||| | ||||| |
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|
| T |
10299796 |
cgtacacgtgtccaaagtgcaacaaagtaatttcaacatcccattaatttgctagtcatgtggcaactcactacaattatgaaactcaagagaaaagaaa |
10299895 |
T |
|
| Q |
121 |
aaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttctattgat |
220 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | |||| ||||||| ||| ||| ||| ||||||||| ||| |||||| || ||| |||||||||| |
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|
| T |
10299896 |
aaagagatacatgtctaggatcccaaagagataaaatcttcagattccaaaactcaatgttggaacaacaacttttgttcaagttgttgtttctattgat |
10299995 |
T |
|
| Q |
221 |
cagtcacatgctccttctttcagttatgatactcaaaatatgag |
264 |
Q |
| |
|
||||| |||||| ||||| ||| |||||||| |||||||||||| |
|
|
| T |
10299996 |
cagtcgcatgctgcttctgtcaattatgataatcaaaatatgag |
10300039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 264
Target Start/End: Complemental strand, 10299735 - 10299555
Alignment:
| Q |
84 |
caagtcactacaagactgaaagtgaagaagagagaaaaaa-gagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatg |
182 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||| |
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|
| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
183 |
gaacaactactcttgttcctgtcattgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatgag |
264 |
Q |
| |
|
||||||||||| ||||||| || || ||||| ||||||| || |||||| ||| ||| |||||||| |||||||||||| |
|
|
| T |
10299635 |
gaacaactacttttgttccggttgtt-cttctgttgatcattctcatgctactttgatcaattatgataatcaaaatatgag |
10299555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 38261060 - 38261211
Alignment:
| Q |
81 |
catcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatga |
180 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| ||||||||||||||| |||| |
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|
| T |
38261060 |
catcaagtcactgcaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatga |
38261159 |
T |
|
| Q |
181 |
tggaacaactactcttgttcctgtcattgcttctattgatcagtcacatgct |
232 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| | |||| ||||||||||| |
|
|
| T |
38261160 |
tggaacaactacttttgttcctgttattgcttgtggtgataagtcacatgct |
38261211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 38244760 - 38244911
Alignment:
| Q |
81 |
catcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatga |
180 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
38244760 |
catcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatga |
38244859 |
T |
|
| Q |
181 |
tggaacaactactcttgttcctgtcattgcttctattgatcagtcacatgct |
232 |
Q |
| |
|
||||| ||||||| |||||||||| |||||| | |||| ||||||||||| |
|
|
| T |
38244860 |
tggaagaactacttttgttcctgttgttgcttgtgctgataagtcacatgct |
38244911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 85 - 263
Target Start/End: Complemental strand, 22222406 - 22222226
Alignment:
| Q |
85 |
aagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagag--accagatctccagattcaaaagctcgatgatg |
182 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||| || |||||| |
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|
| T |
22222406 |
aagtcactacaaatctgaaactctagaagagaaaaaaaagagatacatgtctaggatccgaaagagtgaccaaatctccggattcataagatcaatgatg |
22222307 |
T |
|
| Q |
183 |
gaacaactactcttgttcctgtcattgcttctattgatcagtcacatgctccttctttcagttatgatactcaaaatatga |
263 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||| || || |||||| ||| | ||| |||||||| ||||||||||| |
|
|
| T |
22222306 |
gaacaactacttttgttcgagttgttgcttctattgaccaatctcatgctgcttttgtcaattatgataatcaaaatatga |
22222226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 22222470 - 22222712
Alignment:
| Q |
23 |
tacacgtgtccagagtgcaacaaa-gtaatagcaacatcacagaaattcgctgctcatgcatcaagtcactacaagactgaaagtgaagaagagagaaaa |
121 |
Q |
| |
|
||||||||| || ||||||||||| ||||| ||||||| || ||||| ||| ||||| ||||||||||||| ||||| | ||||||| |||||| |
|
|
| T |
22222470 |
tacacgtgtgcaaagtgcaacaaaagtaatttcaacatcccaaaaatttgctagtcatgtggcaagtcactacaattttgaaactcaagaagaaagaaaa |
22222569 |
T |
|
| Q |
122 |
aagagatacatgtctaggatccgaaagagaccagatctccagattcaaaagctcgatgatggaacaactactcttgttcctgtcattgcttctattgatc |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||| ||||||||||| ||| ||| ||||||||| || ||||| | || ||| ||| |||||| |
|
|
| T |
22222570 |
aagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttggaacaacaacatttgtttcagttgttgtttccgttgatc |
22222669 |
T |
|
| Q |
222 |
agtcacatgctccttctttcagttatgatactcaaaatatgag |
264 |
Q |
| |
|
||| |||||| ||||| ||| |||||||| |||||||||||| |
|
|
| T |
22222670 |
agttgcatgctgcttctatcaattatgataatcaaaatatgag |
22222712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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