View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4487_low_6 (Length: 251)
Name: NF4487_low_6
Description: NF4487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4487_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 54396343 - 54396101
Alignment:
| Q |
1 |
tcaaagttcttctaaagggtcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396343 |
tcaaagttcttctaaagggtcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttca |
54396244 |
T |
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| Q |
101 |
actacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcacgttctatgggcaccactcccaccagaggccacccactgaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396243 |
actacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcatgttctatgggcaccactcccaccagaggccacccactgaacc |
54396144 |
T |
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| Q |
201 |
aaagggaactagttgatcatatttctatgtcattccctatgct |
243 |
Q |
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| T |
54396143 |
aaagggaactagttgatcatatttctatgtcattccctatgct |
54396101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 54381459 - 54381246
Alignment:
| Q |
1 |
tcaaagttcttctaaagggtcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttca |
100 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54381459 |
tcaaagttcttctaaggggtcaatatggagacatgatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttca |
54381360 |
T |
|
| Q |
101 |
actacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcacgttctatgggcaccactcccaccagaggccacccactgaacc |
200 |
Q |
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|||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||| |
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| T |
54381359 |
actacttggaatgaagcctggggaagctccactgtgtcatttcttccctgtaaagcacattgtatgggcgccactcccaccagaggccaccaactgaaca |
54381260 |
T |
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| Q |
201 |
aaagggaactagtt |
214 |
Q |
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| T |
54381259 |
agagggaactagtt |
54381246 |
T |
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