View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4488-Insertion-1 (Length: 1208)
Name: NF4488-Insertion-1
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 485 - 1024
Target Start/End: Original strand, 1909832 - 1910369
Alignment:
| Q |
485 |
agacctcgaagaggagctcactccgaggtcccaaatcaatatcacaagatcaacctaaatgggtttagctaattatagttgtatgttacccttctatttt |
584 |
Q |
| |
|
|||||||||| | ||| |||||||| ||||||| |||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
1909832 |
agacctcgaaaataagcacactccgaagtcccaagtcaatatcacaagaccaag-----tgggtttagctaatta--gttttatgttacccttctatttt |
1909924 |
T |
|
| Q |
585 |
caaatttgcttatttctttgaccttgtctttttattttcttatcactaaatcaaactctttaattttccttttatgttacccttctattggccaaagaaa |
684 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1909925 |
caaatttgtttatttctttgaccttgtctttttattttcttatcactaaatcaaactctttaattttccttttatgttacccttctattgggcaaagaaa |
1910024 |
T |
|
| Q |
685 |
taaactaatttgaaaaacaannnnnnnnnnggctgtattacaaaggaacaaagtaaaagaaaatagnnnnnnnctaaacaatacatagttagtttgtctc |
784 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1910025 |
taaactaatttgaaaaacaatttttttt--ggctgtattacaaaggaacaaagtaaaagaaaatagaaaaaatctaaacaatacatagttagtttgtctc |
1910122 |
T |
|
| Q |
785 |
ttagaaagagagaccctaaactatctcgaggacgatcccaatgagatgaatgtacggaatggacacctttcctaactataaagtcaacacatatataatg |
884 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1910123 |
ttaaaaagagagactctaaactatctcgaggacgatcccaatgagatgaatgagcggaatggacacctttcctaactataaagtcagcacatatataatg |
1910222 |
T |
|
| Q |
885 |
attccttgtaatgtgaactaaattgatagtcctatggtgt-agacaccgtagatttctagta-----acatgcaaatttgtatttgtcatattgag-ata |
977 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||| | | ||||||||||||||||| | ||||||||| ||||||||||||||||||| ||| |
|
|
| T |
1910223 |
ttttcttgtaatgtgaactaaattgatagtcccatggtataaaacaccgtagatttctagcaacaacacatgcaaacttgtatttgtcatattgagaata |
1910322 |
T |
|
| Q |
978 |
aggtctaccgcctccaaacaatcatttttagaaatgaaatttgtata |
1024 |
Q |
| |
|
|| |||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1910323 |
agatctatcgcctccaaataatcatttttagaaatgaaatttgtata |
1910369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 243 - 435
Target Start/End: Original strand, 1909558 - 1909750
Alignment:
| Q |
243 |
tcaaactaatccatcgaaattgataccagaaaaattgaatatgacaacttgagacgagcacactctaaaattttaagccaacactatcacatcaatccaa |
342 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||| |||| |
|
|
| T |
1909558 |
tcaaactagtccaccgaaattgataccaggaaaattgaatatgacaacttgagacgaatacactctaaaattttaagtcaacactaacagatcaacccaa |
1909657 |
T |
|
| Q |
343 |
atgagtttataaattgaattttgtaatgaatcgttagatatagctacaataaaaatatgacatttcaatttgtttgtcagtttcatgaagtca |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1909658 |
atgagtttataaattgaattttgtaatgaatcgttagatatatctacaataaaaatatgacatttcaatttgtttgccagtttcatgaagtca |
1909750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 1909307 - 1909483
Alignment:
| Q |
8 |
gtattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1909307 |
gtattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactc |
1909406 |
T |
|
| Q |
108 |
aaacttttgaaaataaaacaaatggaaatgtttaaaatatc--------attgagattcaaatacaatccgaacttc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1909407 |
aaacttttgaaaataaaacaaatggaaatgtttaaaatatcattatcaaattgagattcaaatacaatccgaacttc |
1909483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 147; E-Value: 7e-77
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 1905074 - 1905249
Alignment:
| Q |
8 |
gtattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1905074 |
gtattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactc |
1905173 |
T |
|
| Q |
108 |
aaacttttgaaaataaaacaaatggaaatgtttaaaatatc--------attgagattcaaatacaatccgaactt |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1905174 |
aaacttttgaaaataaaacaaatggaaatgtttaaaatatcattatcaaattgagattcaaatacaatccgaactt |
1905249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 127; E-Value: 6e-65
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 1899612 - 1899750
Alignment:
| Q |
9 |
tattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1899612 |
tattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactca |
1899711 |
T |
|
| Q |
109 |
aacttttgaaaataaaacaaatggaaatgtttaaaatat |
147 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
1899712 |
cacttttgacaataaaacaaatggaactgtttaaaatat |
1899750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 1914619 - 1914758
Alignment:
| Q |
8 |
gtattatggggcaaagctacagaagagatagaggaagatgttggtagt---ttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
1914619 |
gtattatggggcaaagctacagaagagatagaggaagatgttggtggtagcttgcagtcaccatctactgagaatgcacctcttttgcaaagcaatagag |
1914718 |
T |
|
| Q |
105 |
ctcaaacttttgaaaataaaacaaatggaaatgtttaaaa |
144 |
Q |
| |
|
| ||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
1914719 |
cagaaacttttgaaaagaaaatagatggaaatgtttaaaa |
1914758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 1893699 - 1893835
Alignment:
| Q |
8 |
gtattatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactc |
107 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| ||||| | ||||||| |
|
|
| T |
1893699 |
gtattatggggcaaagcaacagaaaagatagaggaagatgttggtagcctagagtcaccatctatagagaatgcacctcttttacaaagttatagaactg |
1893798 |
T |
|
| Q |
108 |
aaacttttgaaaataaaacaaatggaaatgtttaaaa |
144 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
1893799 |
aaacatttgaaaagaaaacaaatggaaatatttaaaa |
1893835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 1881531 - 1881661
Alignment:
| Q |
14 |
tggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaactt |
113 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||||||||| | ||||||||||||| || ||||||||||| |||||||||| ||||| | |||||| |
|
|
| T |
1881531 |
tggggcaaatcaagagaagagatagaggaagatgttggtagctcagagtcaccatctacagataatgcacctctattgcaaagctgtagaattgaaactt |
1881630 |
T |
|
| Q |
114 |
ttgaaaataaaacaaatggaaatgtttaaaa |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
1881631 |
ttgaaaacaaaacaaatggaaatgtttaaaa |
1881661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 1888534 - 1888661
Alignment:
| Q |
14 |
tggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaactt |
113 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||||||||| | ||||||||||||| || ||||||||||| |||||||||| ||||| | |||||| |
|
|
| T |
1888534 |
tggggcaaatcaagagaagagatagaggaagatgttggtagctcagagtcaccatctacagataatgcacctctattgcaaagctgtagaattgaaactt |
1888633 |
T |
|
| Q |
114 |
ttgaaaataaaacaaatggaaatgttta |
141 |
Q |
| |
|
||||||| ||||||||||||| |||||| |
|
|
| T |
1888634 |
ttgaaaacaaaacaaatggaattgttta |
1888661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 774 - 829
Target Start/End: Complemental strand, 17344972 - 17344917
Alignment:
| Q |
774 |
tagtttgtctcttagaaagagagaccctaaactatctcgaggacgatcccaatgag |
829 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||| ||||||||||||||| ||| |||| |
|
|
| T |
17344972 |
tagtttgtcttttagaatgagagactctaaattatctcgaggacgataccagtgag |
17344917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 485 - 549
Target Start/End: Complemental strand, 28846755 - 28846691
Alignment:
| Q |
485 |
agacctcgaagaggagctcactccgaggtcccaaatcaatatcacaagatcaacctaaatgggtt |
549 |
Q |
| |
|
|||| |||| ||||||| |||||| ||||||||| |||||| ||| |||||||||||| |||||| |
|
|
| T |
28846755 |
agacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtt |
28846691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 839 - 922
Target Start/End: Complemental strand, 21237465 - 21237382
Alignment:
| Q |
839 |
cggaatggacacctttcctaactataaagtcaacacatatataatgattccttgtaatgtgaactaaattgatagtcctatggt |
922 |
Q |
| |
|
|||||||| |||| ||| || | ||||| |||||||||||| ||| | ||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
21237465 |
cggaatgggcacccttcttagccataaaaccaacacatatattatgctaccttggaatgtgaactaagttgatagtcccatggt |
21237382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University