View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4488-Insertion-10 (Length: 342)

Name: NF4488-Insertion-10
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4488-Insertion-10
NF4488-Insertion-10
[»] chr3 (1 HSPs)
chr3 (8-342)||(42695901-42696235)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 42695901 - 42696235
Alignment:
Q  8 attgcaacgtttgaaactagtataacatattgttgtgcatggtaacatctagaaccttgtataaaaatgtgttattatagtattagtaggtacctgttta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  42695901 attgcaacgtttgaaactagtataacatattgttgtgcatggtaacatctagaaccttgtataaaaatgtgttattatagtatcagtaggtaccttttta 42696000  T
Q  108 agagcaggaaccatagcatcaatgttattaatattgtttccaaaagcattaagagcttttcctaacaacaaataaccaacaggaagtgccatgccatgca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42696001 agagcaggaaccatagcatcaatgttattaatattgtttccaaaagcattaagagcttttcctaacaacaaataaccaacaggaagtgccatgccatgca 42696100  T
Q  208 caatcgaacctaatgttcccaaacccataagaatccagtccacataatcagcatagctcaatagtttaaaaaatggcaaagctctcaccacgttcttctt 307  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42696101 caatcgaacctaatgttcccaaacccataagaatccaatccacataatcagcatagctcaatagtttaaaaaatggcaaagctctcaccacgttcttctt 42696200  T
Q  308 catcccatcatcatcatgaccattttcttcttcag 342  Q
    |||| ||||||||||||||||||||||||||||||    
T  42696201 catctcatcatcatcatgaccattttcttcttcag 42696235  T

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