View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4488-Insertion-12 (Length: 307)

Name: NF4488-Insertion-12
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4488-Insertion-12
NF4488-Insertion-12
[»] chr3 (4 HSPs)
chr3 (8-254)||(42674075-42674321)
chr3 (258-307)||(42676131-42676180)
chr3 (11-64)||(29542368-29542421)
chr3 (11-64)||(41878757-41878810)
[»] chr5 (1 HSPs)
chr5 (15-58)||(29994689-29994732)
[»] chr1 (2 HSPs)
chr1 (9-61)||(52251409-52251461)
chr1 (9-63)||(3938252-3938306)
[»] chr4 (2 HSPs)
chr4 (9-55)||(8814074-8814120)
chr4 (9-55)||(22495346-22495392)
[»] chr2 (2 HSPs)
chr2 (18-64)||(24739882-24739928)
chr2 (18-64)||(40426914-40426960)
[»] scaffold0225 (1 HSPs)
scaffold0225 (8-64)||(6570-6626)
[»] chr6 (1 HSPs)
chr6 (8-64)||(18015723-18015779)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 42674075 - 42674321
Alignment:
Q  8 aaattaaccaatgcctagaacagtaaagggattaagccaccaaccatgatagttaaatctaaattgttagcatttaaatttggtgaaaatggtatctctg 107  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  42674075 aaattagccaatgcctagaacagtaaagggactaagccaccaaccatgatagttgaatctaaattgctaacatttaaatttggtgaaaatggtatctctg 42674174  T
Q  108 aagtttggtgaacacagtagtcatgacgcatttttgtattcatttatataaagatatattcaaatatcaaatagacgtcgtattgatatccaccaaactt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42674175 aagtttggtgaacacagtagtcatgacgcatttttgtattcatttatataaagatatattcaaatatcaaatagacgtcgtattgatatccaccaaactt 42674274  T
Q  208 atttaaaaagaaataaaatatacccaccaaactataaggtatttaag 254  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  42674275 atttaaaaagaaataaaatacacctaccaaactataaggtatttaag 42674321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 42676131 - 42676180
Alignment:
Q  258 ttatctttaaatttttaatcaaaatgttactatactttagtatctatgtg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42676131 ttatctttaaatttttaatcaaaatgttactatactttagtatctatgtg 42676180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 29542368 - 29542421
Alignment:
Q  11 ttaaccaatgcctagaacagtaaagggattaagccaccaaccatgatagttaaa 64  Q
    ||||||||| ||||| | |||||| ||| |||||||||||||||||||||||||    
T  29542368 ttaaccaattcctagtaaagtaaatggactaagccaccaaccatgatagttaaa 29542421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 41878810 - 41878757
Alignment:
Q  11 ttaaccaatgcctagaacagtaaagggattaagccaccaaccatgatagttaaa 64  Q
    |||||| || ||||| | |||||| ||| |||||||||||||||||||||||||    
T  41878810 ttaacctattcctagtaaagtaaatggactaagccaccaaccatgatagttaaa 41878757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 29994732 - 29994689
Alignment:
Q  15 ccaatgcctagaacagtaaagggattaagccaccaaccatgata 58  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  29994732 ccaatgcctaaaacagtaaacggattaagccaccaaccatgata 29994689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 52251461 - 52251409
Alignment:
Q  9 aattaaccaatgcctagaacagtaaagggattaagccaccaaccatgatagtt 61  Q
    ||||||||||||||||||| ||  || ||| ||||||||||||||||||||||    
T  52251461 aattaaccaatgcctagaatagagaacggactaagccaccaaccatgatagtt 52251409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 3938306 - 3938252
Alignment:
Q  9 aattaaccaatgcctagaacagtaaagggattaagccaccaaccatgatagttaa 63  Q
    ||||||||||||||||| | |||||| || ||| ||||||||||||| |||||||    
T  3938306 aattaaccaatgcctaggatagtaaacgggttatgccaccaaccatggtagttaa 3938252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 8814120 - 8814074
Alignment:
Q  9 aattaaccaatgcctagaacagtaaagggattaagccaccaaccatg 55  Q
    ||||||||||||||||||| || ||| ||| ||||||||||||||||    
T  8814120 aattaaccaatgcctagaatagaaaacggactaagccaccaaccatg 8814074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 22495346 - 22495392
Alignment:
Q  9 aattaaccaatgcctagaacagtaaagggattaagccaccaaccatg 55  Q
    |||||||||||||||||||  || || ||||||||||||||||||||    
T  22495346 aattaaccaatgcctagaatggtgaacggattaagccaccaaccatg 22495392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 24739928 - 24739882
Alignment:
Q  18 atgcctagaacagtaaagggattaagccaccaaccatgatagttaaa 64  Q
    |||||||||| ||| || ||| |||||||||||||||||||||||||    
T  24739928 atgcctagaatagtgaacggactaagccaccaaccatgatagttaaa 24739882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 40426914 - 40426960
Alignment:
Q  18 atgcctagaacagtaaagggattaagccaccaaccatgatagttaaa 64  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||    
T  40426914 atgcctagtaaagtgaacggattaagccaccaaccatgatagttaaa 40426960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 6626 - 6570
Alignment:
Q  8 aaattaaccaatgcctagaacagtaaagggattaagccaccaaccatgatagttaaa 64  Q
    |||||| || |||||||||| || ||| ||| | |||||||||||||||||||||||    
T  6626 aaattagcctatgcctagaatagcaaacggacttagccaccaaccatgatagttaaa 6570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 18015723 - 18015779
Alignment:
Q  8 aaattaaccaatgcctagaacagtaaagggattaagccaccaaccatgatagttaaa 64  Q
    |||||| || |||| ||| | |||||| ||| |||||||||||||||||||||||||    
T  18015723 aaattagcctatgcgtagtaaagtaaacggagtaagccaccaaccatgatagttaaa 18015779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University